BAC Information

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BAC

Clone NameMSMg01-435K21
ChromosomeX (Build37)
Map Location 161,691,688 - 161,831,503
singlet/doubletdoublet
Overlap geneGlra2
Upstream geneBmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8, Gpm6b, Ofd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435K21.T7 (MSMg01no435_k21.b1)MSMg01-435K21.TJ (MSMg01no435_k21.g1)
ACCAG526928AG526929
length800803
length of high quality
(start - end)		394 (42 - 435)407 (71 - 477)
definitionCHROMAT_FILE: MSMg01no435_k21.b1 PHD_FILE: MSMg01no435_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:31 2005CHROMAT_FILE: MSMg01no435_k21.g1 PHD_FILE: MSMg01no435_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,691,688 - 161,692,077)(161,831,155 - 161,831,503)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTCCAGATGATGCTCATTGAGACTGGTATTGGTTTCCAGAACTGCAGA
GCATGTCTCTATTTCTGGGTTTCCACCGACTTGTGTCATTATCACTTTCT
TCCATTAAGGCCAGGAATGCAAATTGACCTTAGGATGCAATGTGAAGAGT
AGATGCAAAGAGTAGCCAAGGATTTATGTTTTCTGTACAATTAATGAGGT
CTACACTTTTCCTTAGACTCATTCGACAGCAGACTCTCATTAAGAGAAGA
GTAAAAGATTCCTAATTCTTCTGTGTTTGAGGGAGACAATCTGCTGCACT
CACAAGCCTATTCCATAGGGTACAGTAACCCTACATGTTGAGAGTTTTCT
TAAATTCAATTTGCTTCATAAATGTGCAACTGTTAAGATAATAGGGTAGC
TAATCTCATATACAAATGGAGAGCTCTTAGGCTTAGCAAATGAAAGAAAG
AAAACCTTACCAGTGTTGTAATGCTTTGTGCAATAACCAAGCTCCTTCTC
TTCTTTTCAAAAAAACTGGGCAAGGTGGAGCCTTCCGCAACTTGTACTGG
ACCTCCCTTTACCACCCCATAACAGGGCATTCTGGGGGGACCCCTCTGGG
GGTAGAATTATTAACAACCACGTTCTTTTTCTTTTAAAGGACAAATGTAT
TGCCCGCGGGACCTTTTTTAAGAAAAATTCCCCCTACCGTTTTTCAAAAT
TTTTCGAGCCCTCCCTTTTTTCCCCTTGTCCCCTAATTCCCTTTTCCCCC


TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGTTATCCTTAATTTTATGGTGGGATAG
AATACAGGGAATCTACCTGGGCACTGAGAAATTTCAGATATTTGCATTAT
AGTGTCTTACACTGGATTGCATAATACACGTATAAATTTAATGTTCTTTG
ACCTGTGTAAGCTACATGCTTTTATTATTTTTTTAATTAGGTATTTTCTT
CATTTACATTTCCAATGCTATCCCAAAAGTCCCCCAAAACATCCCTCCCA
ATCCCCTACTCACCCACTCCCACTTCTTCGCCCTGGTGTTCCCCTGTACT
GAGGCATATAAAGTTTGCAACACCAGTGAGCCTCTCTTTCCAATGATGGC
TGACTAGGCCAACTTCTGATACGTATGCACCTAAAGACACAAGCTCTGAG
GGGGGGTACTGGTTAGATCATATTGTTGTTCCACTATAGGGGTGCAAACC
CCTTTACCACCTTGGGTACTTTCTCTAGCTCCCCCTTTGGGGGGCTCCCG
ATTCCTCAAATACGTACGGGGAGCACCCCTTTTTTGTTTCGCTATCCTCT
TCCTTTTTCCCCCACAAAAATCTTTTTTCCGGCGCCTCCTCCTCTAATTT
TTTTTTGTTTTTCAATTCCCGCCTTTTTTTTCTATCTGTTTTTTCAGTCC
ATTTCCTCACAACATATTCTCCCTCATTTTTCCTTCTCTTTTTTTTATTT
CTCCCACCCCCCCCTTTTTCCTTTTCTCCCCCTTCCCGCTTTACTTTTAC
TAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_k21.b1 MSMg01no435_k21.b1 CHROMAT_FILE:
MSMg01no435_k21.b1 PHD_FILE: MSMg01no435_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:31 2005
         (394 letters)



>mm_chrX_161691484_161692277
          Length = 794

 Score =  746 bits (386), Expect = 0.0
 Identities = 389/390 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctccagatgatgctcattgagactggtattggtttccagaactgcagagcatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctccagatgatgctcattgagactggtattggtttccagaactgcagagcatg 264

                                                                       
Query: 65  tctctatttctgggtttccaccgacttgtgtcattatcactttcttccattaaggccagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctctatttctgggtttccaccgacttgtgtcattatcactttcttccattaaggccagg 324

                                                                       
Query: 125 aatgcaaattgaccttaggatgcaatgtgaagagtagatgcaaagagtagccaaggattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgcaaattgaccttaggatgcaatgtgaagagtagatgcaaagagtagccaaggattt 384

                                                                       
Query: 185 atgttttctgtacaattaatgaggtctacacttttccttagactcattcgacagcagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgttttctgtacaattaatgaggtctacacttttccttagactcattcgacagcagact 444

                                                                       
Query: 245 ctcattaagagaagagtaaaagattcctaattcttctgtgtttgagggagacaatctgct 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ctcattaagagaagagtaaaagattcctaatttttctgtgtttgagggagacaatctgct 504

                                                                       
Query: 305 gcactcacaagcctattccatagggtacagtaaccctacatgttgagagttttcttaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcactcacaagcctattccatagggtacagtaaccctacatgttgagagttttcttaaat 564

                                         
Query: 365 tcaatttgcttcataaatgtgcaactgtta 394
           ||||||||||||||||||||||||||||||
Sbjct: 565 tcaatttgcttcataaatgtgcaactgtta 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_k21.g1 MSMg01no435_k21.g1 CHROMAT_FILE:
MSMg01no435_k21.g1 PHD_FILE: MSMg01no435_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:31 2005
         (407 letters)



>mm_chrX_161831155_161831961
          Length = 807

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggttatccttaattttatggtgggatagaatacagggaatctacctgggcactgagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 349 aaggttatccttaattttatggtgggatagaatacagggaatctacatgggcactgagaa 290

                                                                       
Query: 61  atttcagatatttgcattatagtgtcttacactggattgcataatacacgtataaattta 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 289 atttcagatatttgcattatagtgtcttacactggattgcataatacatgtataaattta 230

                                                                       
Query: 121 atgttctttgacctgtgtaagctacatgcttttattatttttttaattaggtattttctt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atgttctttgtcctgtgtaagctacatgcttttattatttttttaattaggtattttctt 170

                                                                       
Query: 181 catttacatttccaatgctatcccaaaagtcccccaaaacatccctcccaatcccctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 catttacatttccaatgctatcccaaaagtcccccaaaacatccctcccaatcccctact 110

                                                                       
Query: 241 cacccactcccacttcttcgccctggtgttcccctgtactgaggcatataaagtttgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 cacccactcccacttcttcgccctggtgttcccctgtactgaggcatataaagtttgcaa 50

                                                            
Query: 301 caccagtgagcctctctttccaatgatggctgactaggccaacttctga 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  caccagtgagcctctctttccaatgatggctgactaggccaacttctga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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