BAC Information

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BAC

Clone NameMSMg01-435M07
ChromosomeX (Build37)
Map Location 72,368,621 - 72,369,015
singlet/doubletsinglet
Overlap geneMpp1
Upstream geneOpn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1
Downstream geneEG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435M07.T7 (MSMg01no435_m07.b1)MSMg01-435M07.TJ (MSMg01no435_m07.g1)
ACCAG526996AG526997
length772779
length of high quality
(start - end)
249 (62 - 310)394 (76 - 469)
definitionCHROMAT_FILE: MSMg01no435_m07.b1 PHD_FILE: MSMg01no435_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:38 2005CHROMAT_FILE: MSMg01no435_m07.g1 PHD_FILE: MSMg01no435_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGACCGCGGAAT
CAGCAGTTCCGCCATGTGGCTCTGGCCTTAGAGTCAAAATAAAAGGGACT
ACTGTGACAATTGATGATGGTTAGCTGGAGCTTAGACATTAGCAGTGATT
AAGAAGAGACCAGGATCATTGAGGTGACATCTTCTGGGAAGTGTTTTATG
AGAGAACAAAGAAGCTGAGTTCTAGAGATAGCCAAAGTTGTACCTCCTGC
TACAGCTGTACAAGGTAATGGGAAAGAGTCACCCAGGTGGAACTGGTTTT
GAAGGCACATTTTTTTCTTGGAGAGTAGCTGAGGCTTGGTATGGCGAGAG
GCCATGGAAGGCCATGAGCAAAGTTGCAGCCTTAATTGCAGTTGATGGCC
TAGGACCGACCCCGCCCTGCCAAGAATTTGAAACCTGGCTCTATGACGAT
ATACCCAAAGACTTTTGGCGATGCCCAGTCGCCACATAACCCCCCAGTCA
ATTGGAGAGGCTCCCCTCCCGTTCCCGCCCTCCCTTTCCTTCCTCCTTCT
CTTTCCCTATTTTTTCCTTTCCTTTTTTTCTCCCTTTTTTCCCTGTTTTC
CCCTCCTCTTTTCCCCCGTTTTCCCCCTTTTTTTTTCCCTCCTGTCTTTC
TTCCCCCTTACCCTTTCCCCCCTTTCCCCCCCCATCCTTTTTTTTCCTCT
TCCCCCTCTCTTTGTCCCCCCTTTTTCCCCCCTCCCCCTTTTTCCCCTTT
CCTCCTTTTCCCCCATTCCCGC
GATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCTTGTTGGATCTTTCGAGGA
TGTCCACACCTGTGTGAAATTGGTACCTACAGGAGCAGATTCGTCAGGTA
AGAGAGCAAGCACATAAATACCTTTAATAACTGCTTGCTGAATCTACTGA
AGCCCAAGTGATCTAGAAACTAAAATCAACCTACTGACATGTAAGACAAA
GTTAAGAAAGATGGCAAAGTATCAGGAGGGGCAAACAGAAAGGCAGCATA
AACACCAAGCAGAATCCATATAGTGGATTCTGAGACTACAGACTGAGAGA
AACGAATCCACCTGCTCAAAGCCATACAGCAAGAATAAAGTAAAGCAAGG
ATTCAGAAATACCAATATACACCACAATCTCCAGATACCCAGGGCAATAG
TCTTGTTTTTTTTTATGAGATTGATGTTCTCAAGCTACTAGCCCTGGTTT
GCAGTTTTAGTAATCGACAGTAGAAAACCTTCCCCTCTTAGTATGTATAT
TCCCGCACTCCTTCCGTTTATTCCCCCCTTTATATAATAAACTTCGCCCT
GCTAAGAAATTGTCCCCCGGCGCCCCCCTTTTTTTTTTTCTCTTCTTTGG
CCCCTAATTAACTTCCCTGTTTTGGTCCCGCGGTCGCTTTGTGTTGCTCC
CTCCTATTATCGCCATTGTTTTTTTTTTTGCCCCCCCCCCTTTGTTTTTT
TTCTCCACCCTCCCTCGTTTATCTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_m07.g1 MSMg01no435_m07.g1 CHROMAT_FILE:
MSMg01no435_m07.g1 PHD_FILE: MSMg01no435_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:38 2005
         (394 letters)



>mm_chrX_72368421_72369215
          Length = 795

 Score =  748 bits (387), Expect = 0.0
 Identities = 393/395 (99%), Gaps = 1/395 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcccttgttggatctttcgaggatgtccacacctgtgtgaaattggtacctacaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcccttgttggatctttcgaggatgtccacacctgtgtgaaattggtacctacaggag 260

                                                                       
Query: 61  cagattcgtcaggtaagagagcaagcacataaatacctttaataactgcttgctgaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagattcgtcaggtaagagagcaagcacataaatacctttaataactgcttgctgaatct 320

                                                                       
Query: 121 actgaagcccaagtgatctagaaactaaaatcaacctactgacatgtaagacaaagttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgaagcccaagtgatctagaaactaaaatcaacctactgacatgtaagacaaagttaa 380

                                                                       
Query: 181 gaaagatggcaaagtatcaggaggggcaaacagaaaggcagcataaacaccaagcagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagatggcaaagtatcaggaggggcaaacagaaaggcagcataaacaccaagcagaat 440

                                                                       
Query: 241 ccatatagtggattctgagactacagactgagagaaacgaatccacctgctcaaagccat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacatagtggattctgagactacagactgagagaaacgaatccacctgctcaaagccat 500

                                                                       
Query: 301 acagcaagaataaagtaaagcaaggattcagaaataccaatatacaccacaatctccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagcaagaataaagtaaagcaaggattcagaaataccaatatacaccacaatctccaga 560

                                              
Query: 361 tacccagggcaatagtcttgttttttttt-atgag 394
           ||||||||||||||||||||||||||||| |||||
Sbjct: 561 tacccagggcaatagtcttgttttttttttatgag 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)