BAC Information

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BAC

Clone NameMSMg01-436F18
ChromosomeX (Build37)
Map Location 128,690,873 - 128,691,182
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665799, LOC670449, LOC245600
Downstream geneEG631264, LOC665846, LOC665850, LOC665854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436F18.T7 (MSMg01no436_f18.b1)MSMg01-436F18.TJ (MSMg01no436_f18.g1)
ACCAG527446AG527447
length740744
length of high quality
(start - end)		531 (120 - 650)542 (76 - 617)
definitionCHROMAT_FILE: MSMg01no436_f18.b1 PHD_FILE: MSMg01no436_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:24 2005CHROMAT_FILE: MSMg01no436_f18.g1 PHD_FILE: MSMg01no436_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATCATATTTCTTTCCCTATAATGATGTATACTTAGTTTATT
CTAAAGAATTATTCANAATAATGGTCCATGCTATATTTATTTGCTTGAAT
TTTCACTATTAAATGTGACATCTTTCTTGGTTATGAACATACCAATAAAA
GCTAGGAAATAGGCTTTGATTCTTAACCTTTTTTTAATTAGGTATTTTCC
TCATTTACATTTCCAATGATATCCCAAAAGTCCTCCATACCCTCCCTCCC
CCGACTCCCCTACCCACTCACTCCCATTTTTTGGCCCTGGCGTTCCCCTG
TACCGAGGCATATAAAGTTTGCATGTCCAATTGGCCTCTCTTTCCGCTGA
TGGCTGACTACGCCATCTTTTGATACATATGAAGCTAGAGACAAGAGCTT
CAGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGAT
CCCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGT
GATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGGC
CCGGCATAGTCTCTTAACCTTTTTACTTACCATTCACAGTCATGAAGATT
TGTTTAATCTTGTGTTTTGAAATGAATTGAAATTTATAATGTAATGGTTA
ATAACATCCAATCATATTATTTGTAAAACACATATTTCCN

NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCACATTTT
TAAATGGGGTTATCTGATTTTCTGGAGTCCATCTTTTTCAGTTCTTTATA
TATATTAGATATTAGTCCCCTATCTGATTTAGAATAAGTAAAGATCCTTT
CCCAATCTGTTGATGGCCTTTTTGTCTTATTGACAGTTCTTTTGCCTTAC
AGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTCCATCTTACA
GCACAAGCCATTGCTCTTCTTTTCAGGAATTTTTCCCCTGTGCATATATC
TTCGAGGCTTTTCTCCACTTTCTCCTCTTTAAGTTTCACTGTCTATGTTT
TTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTAAAAGGAGAT
AGGAATGGATCAATTCGCATTCTTCTACATGTTAACTGCCAGTTGTGCCA
GCACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCT
CCATTGTCAAAAGTCAAGTGACCGTAGGTGTGTGGGTTCATTTCTGCATC
TTCAATTCTATTCCACTGGTCTACTTGTCTGTTGCTATACCAGGATCCTG
CAGTTTTTATCACAATTGAAATGGAATACAGCTTTAGGTCAAGCATGGTG
ATTCCACCAGAGGTTCTTTTATCCTTTGAAAAAAGTTTTTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_f18.b1 MSMg01no436_f18.b1 CHROMAT_FILE:
MSMg01no436_f18.b1 PHD_FILE: MSMg01no436_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:24 2005
         (531 letters)



>mm_chrX_128690873_128691803
          Length = 931

 Score =  553 bits (286), Expect = e-161
 Identities = 304/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggtccatgctatatttatttgcttgaattttcactattaaatgtgacatctttcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 310 aatggtccatgctatatttatttgcttgaattttcactattaaatatgacatctttcttg 251

                                                                       
Query: 61  gttatgaacataccaataaaagctaggaaataggctttgattcttaacctttttttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gttatgaacataccaataaaagctaggaaataggctttgattcttaacctttttttaatt 191

                                                                       
Query: 121 aggtattttcctcatttacatttccaatgatatcccaaaagtcctccataccctccctcc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 190 aggtattttcctcatttacatttccaacgatatcccaaaagtcctccataccctcccgcc 131

                                                                       
Query: 181 cccgactcccctacccactcactcccattttttggccctggcgttcccctgtaccgaggc 240
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 130 cccgactcccctacccacccacttccattttttggccctggcgttcccctgtaccgaggc 71

                                                                       
Query: 241 atataaagtttgcatgtccaattggcctctctttccgctgatggctgactacgccatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 70  atataaagtttgcatgtccaattggcctctctttccgctgatggccgactacgccatctt 11

                     
Query: 301 ttgatacata 310
           ||||||||||
Sbjct: 10  ttgatacata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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