BAC Information

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BAC

Clone NameMSMg01-437I04
ChromosomeX (Build37)
Map Location 154,139,598 - 154,139,757
singlet/doubletsinglet
Overlap geneSmpx
Upstream geneLOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465
Downstream geneKlhl34, Cnksr2, EG667483, LOC671033, LOC667487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437I04.T7 (MSMg01no437_i04.b1)MSMg01-437I04.TJ (MSMg01no437_i04.g1)
ACCAG528326AG528327
length830812
length of high quality
(start - end)
165 (50 - 214)---
definitionCHROMAT_FILE: MSMg01no437_i04.b1 PHD_FILE: MSMg01no437_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:55 2005CHROMAT_FILE: MSMg01no437_i04.g1 PHD_FILE: MSMg01no437_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCCTCTGATCTTCCCTTCTGAACTCTAAAGCATGGTGTGGAT
GTTTATCTCATTTATGCCAATAGCCATAACTCGTGGCTTCTGAGTGCTGT
GTTCATCTGCAGCTTTAAATGTAGAGACGAAACCCCGACCTTGGGAGCTC
CCAGAAACTGAGCCACCAACCAAAGGGCATATATAGCAGAGGGCTGCCTC
GTCTAGCCCCCTTGCGATAGGATGTGCCTAGTCATGGAGGAACGTGATGC
CCTTGGCAGTCGTCATTCCCAAGGCGCTATTTTTTCTATGAATATTTGAA
TTGTGCATTTATTTTTTTGATATTCTCAATTACTACATTTCATTACCTAT
CCTCGTTACAGCTACGTTACTGTCCCCCCCCCACTTGACCCCTTTTTTTT
CTTTACCTTTTTCATTTTGCCTTCTCCTAATACCGTTACCCCCACTTCCT
CTCTTCTTTTTTCATTTCCCCACTTCTTTTCTTCCCCTAATCATCCGTTC
TTTACTTTTTTTTTTCCCCCCTCCCCCTTTTTTTTACGCCCTCTTTTCTT
CACCCTCTCCCTGTTCACTTGTTTTTTTCCCCCCACTTTCCTTTCTCTAC
CTTTTCTTCTCTCTTTTCCCTCCATCCTTACTTTTCCATTTTCTTTCTTC
TCTCCCCCTTTTTTCGCTCACCTTTACCCTTTCTCCTTTTTCTCTCCTTC
ATTTTTTACTCCACCTTCCTCCCCTACCTCACATTCACCTTTTTCTACTT
TTTTTCCTCCCCTTTGTCCTCTCCCTTATT
TCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACCTGAGTGGATCCTCGGATTA
GGATAAGACAAAGAATGCGCTGATATATGTGCCCATTGCTGAGTCGCCTT
GTTTATGCATACATGTTGTGTATATGGAGCATGTAGACCTTGCATACCTG
ACAAAGTGACGATGATCTTGGGCGTGTAGCACTGTTGTTTCACTGCTGAA
TAAGACAGATAACAACTTAATATACTCGCTTCTCTTCACACCTAGAAACA
ACGCATTCTACTAAAAGAAGGAAGACTGTATTATTTTTTAACAAAATGCT
CTCCACAATCATGTAACCTCTTTATCTACACTTGACTAGTTGCTGCAGAC
TTATTATCGACTGATACTTCCTCACAGCATCACTAACTTTCCACAATTGC
CTTCCCTGATCCCCCTTCTTATCCTCATGCTTTCTTTCTTTTTTATAACC
CATGCCATCTCTTCTACCCCTCTCTATCTTTACTTTTCTACTACGCCCCA
CTCTTTTCCTCCCCTCCACACTTTATTTATTCCATTTCTTCTTTAACTTA
CTCATTCTCTATTTCCCCTATTACTATCCATACCTAAATCTACATCCTCT
CATCCTTTTTCTTCCATTTCCCCTATTCATCCCTCCCATACCATCTCTCC
CCCCCACTTTACCTATCTACCTCATGTTCTTTCACCTTCTCACACTTATC
TCTATCCCCATTCCTCCATCCATTCTATTTCATTTCTGTTACCTCTCAAC
CCACCATCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_i04.b1 MSMg01no437_i04.b1 CHROMAT_FILE:
MSMg01no437_i04.b1 PHD_FILE: MSMg01no437_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:55 2005
         (165 letters)



>mm_chrX_154139393_154139957
          Length = 565

 Score =  271 bits (140), Expect = 2e-77
 Identities = 155/164 (94%), Gaps = 8/164 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctctgat----cttcccttctgaactctaaagcatggtgtggatgtttatctca 61
           |||||||||||||    ||    ||||||||||||||||||||||||| |||||||||||
Sbjct: 365 gaattcctctgatcaggct----ttctgaactctaaagcatggtgtgggtgtttatctca 310

                                                                       
Query: 62  tttatgccaatagccataactcgtggcttctgagtgctgtgttcatctgcagctttaaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttatgccaatagccataactcgtggcttctgagtgctgtgttcatctgcagctttaaat 250

                                                       
Query: 122 gtagagacgaaaccccgaccttgggagctcccagaaactgagcc 165
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtagagacgaaaccccgaccttgggagctcccagaaactgagcc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)