BAC Information

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BAC

Clone NameMSMg01-439D08
ChromosomeX (Build37)
Map Location 76,329,848 - 76,330,201
singlet/doubletsinglet
Overlap genenone
Upstream geneObp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik, LOC667700, EG546337
Downstream geneEG629116, LOC636082, EG667736, LOC100041373, EG636104, 2410003J06Rik, LOC667749, LOC211702, LOC667755, LOC211705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439D08.T7 (MSMg01no439_d08.b1)MSMg01-439D08.TJ (MSMg01no439_d08.g1)
ACCAG529618AG529619
length752726
length of high quality
(start - end)
375 (45 - 419)355 (74 - 428)
definitionCHROMAT_FILE: MSMg01no439_d08.b1 PHD_FILE: MSMg01no439_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:16 2005CHROMAT_FILE: MSMg01no439_d08.g1 PHD_FILE: MSMg01no439_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTTTCTTTATCTCTGTACCCCATTTTTGATGGGGTTATTTGAATTT
CTGGAGTTCAACGTCTTGAGCTCTTTTATATATTGGATATTAGTCCCCTA
TCAGATTTAAGATTGGTAAAAATTCTTTCTCAATCTTTTATTAGCCTTTT
TGTCTTACTTTTTGTCTTACATCTTTTGCCCAAAAGAAGCTTTGCAATTT
TATGAGGTCCCATTTGTCGATTATTGATCTTACAGCACAGGCTATTGCTT
TTCTGTTTAGGGATTTTCCCCCTGTGCACATATCTTCCAGGTTTTCCCCA
CTTTCTCCTCTATAAAATTCAGTGTCTCTGGTTATATGTGGAGGTCTTTG
ATCCACTTAGACTTGAACTTTGCACAAGGAGATAAGAATTGATCAATTCT
CATTCTTCTACATGATAACCGCCAGTTGTGCCAGTACCATTTGTTGAAAG
TGTTGCCTTTTTTTCTACTAGATTATTTAAGCTCCCTTGTCAATTATTTA
TCGCTCTTATGTGCGCGGTTTCATATCTGTGGTCTCATCTTTATTTCTCT
CGTTCTACTTGTTTCGCTGCTGTATCAATCCCCCTGATCCCCCCTCTTTT
TTTATTTTTTCACCCTGTTTATTTCCCCGCACCCCCACCCCTTATTCTTT
TCCCACCCCCCTGTATTATATTTCTATTCTAATTTGGCATCTCTTTCATA
GA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACATTTTGCTCTTCAGTTGCCTGGAGA
ATCTAAATTCTGTGACAAAAATATAGGATGGAGCCTCACCTACTTTCTTC
GTAATATAAACAAACATAGCTGCAATTCATTGCACTGTAACTTCCACCTA
GTTCGTATGCTTTCATTCACTAAACATTCCAAATTACTCAGATCCCTATG
TATCAATTGGAATTATAGATATAGATATAAATATATTTTATCTTTATGTG
TAAACAACTTACATATTTTTTTAGGCATCCTGAAACCATTTTGATAAAAT
ATAAAAGCATATAGTGGCAGAAAATCTATGCTGGAAATGGAATGATTAAT
TTTCTATGAACAGGGACATACATTGGAATAGACTAGCAAAAAATAAAATT
TACCAAGATTTGAAGGATGAGTCACAGTGAACACAGGATTTGAATGTGGT
ACCATCTAATTAACGAGGAGAGACTGTCTGCACTCTGGCATATAATTCAC
TCTTCTCAAAACTTTACCGAGATGTACTATTTACACTGAATTGTCTGGAG
AAATGGTTACACAATTAACGTATACTTATACGCTTTTTTCTCCCCGCTTC
TCCCTCCCCTTTTTTTTTTTCTTTTTTCCCCCCCCTCCCTCTTCTTCCCT
TCTTTCTTTTTTCTCCTCTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_d08.g1 MSMg01no439_d08.g1 CHROMAT_FILE:
MSMg01no439_d08.g1 PHD_FILE: MSMg01no439_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:16 2005
         (355 letters)



>mm_chrX_76329648_76330401
          Length = 754

 Score =  658 bits (340), Expect = 0.0
 Identities = 351/358 (98%), Gaps = 7/358 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattttgctcttcagttgcctggagaatctaaattctgtgacaaaaatataggatggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acattttgctcttcagttgcctggagaatctaaattctgtgacaaaaatataggatggag 495

                                                                       
Query: 61  cctcacctactttcttcgtaatataaacaaacatagctgcaattcattgcactgtaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cctcacctactttcttcgtaatataaacaaacatagctgcaattcattgcactgtaactt 435

                                                                       
Query: 121 ccacctagttcgtatgctttcattcactaaacattccaaattactcagatccctatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccacctagttcgtatgctttcattcactaaacattccaaattactcagatccctatgtat 375

                                                                       
Query: 181 caattggaattatagatatagatataaatatattttatctttatgtgtaaacaacttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caattggaattatagatatagatataaatatattttatctttatgtgtaaacaacttaca 315

                                                                       
Query: 241 tattttttt---aggcatcctgaaaccattttgataaaatataaaagcatatagtggcag 297
           ||    |||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ta----tttaagaggcatcctgaaaccattttgataaaatataaaagcatatagtggcag 259

                                                                     
Query: 298 aaaatctatgctggaaatggaatgattaattttctatgaacagggacatacattggaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaatctatgctggaaatggaatgattaattttctatgaacagggacatacattggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 754
Length adjustment: 9
Effective length of query: 346
Effective length of database: 745
Effective search space:   257770
Effective search space used:   257770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)