BAC Information

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BAC

Clone NameMSMg01-442B17
ChromosomeX (Build37)
Map Location 159,003,569 - 159,003,926
singlet/doubletsinglet
Overlap geneReps2
Upstream geneRai2, Gm47, Nhs
Downstream geneLOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442B17.T7 (MSMg01no442_b17.b1)MSMg01-442B17.TJ (MSMg01no442_b17.g1)
ACCAG531831AG531832
length767774
length of high quality
(start - end)		479 (47 - 525)395 (74 - 468)
definitionCHROMAT_FILE: MSMg01no442_b17.b1 PHD_FILE: MSMg01no442_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:08 2005CHROMAT_FILE: MSMg01no442_b17.g1 PHD_FILE: MSMg01no442_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTTGATCTTACAGCAGAAGCCATTGTTGTT
CTGTTCAGAAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAACACCAATTGTTGAAAAT
GCTATCTTTCTTCCACTGGATGGTTTTAGCTCCCTTATCGAAGATCAAGT
GACCATATGTGTGTGGGTTTATTTCTGGGTCTTCCCCTCTATTTCTTTGT
TCCACTTTGTCTGTCCCTACACCACTACCCTGCTTTTTTTATTTCCATTG
CTCCGTTTTTTTTTTTTATCTTCTGCCTGTTGCCTTTTTCCCCAGTCCTT
TTTTCCCTTTTATCACTTTTTTCTTTTCCTCCCCTTTTTTGTTTTTTTTT
CCCCTTCTCCTCACCTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCTAGGTGTGAAGGAAGATACTCTC
ATTATAGGGGGCAGAACGGGACCATCAGTTATTGTACTATTACGTATTTA
TGTGCATAGTGCTTTTTTTGTTTCTCTGCAATGGGCACCTGAGCTATAAT
TTACTAAGAAGTGACTTGACTTGTTAACTATATTTTCGTAGTACTGGGGT
TAAATGTAGGGCGTTGTGCATGGTAGGTAAGTATACTACCACTGAGTCTT
ATCCCTAGCTCTTGACCAGTTCCTATTCAATTTTGGCAAACCGGGATAAC
ACCTAAGCAGTGGTAATGACTAATCTGTTCTTGCTCCACTCCAATGATCT
TTTAGACTTTGTACACTTGAACCTTGAAAAGTCATCCATTCTCTTTTATA
AGAAGAGGAACAGCCAGCGTTTGTCATCTTTATTTTTGTCTTCCAAAGAG
GAGGAATAATCAGCTCTGAAACATAGTGAGTAGGCAGACCTTAACAATTT
GAATAAAATCCCTCCTGTAACTACAGGGAAAATCCACTCACCCACTGCAT
ACTTGTAAGGTCCTGGGGTCTACTTTTTGGGTAATTCAACTGGGGGAAAT
GTCCAGGCTTTCTTCCTGCAAATTTTGCCCCCCTCTCTCTCCGCCTATAA
AATGGAGGTTCTCCTCCCCCCCTCTTTCTCTTCCTCGCTCTCTCTAAATC
TCCTCCACTCTCCCTCTCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_b17.g1 MSMg01no442_b17.g1 CHROMAT_FILE:
MSMg01no442_b17.g1 PHD_FILE: MSMg01no442_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:08 2005
         (395 letters)



>mm_chrX_159003569_159004362
          Length = 794

 Score =  615 bits (318), Expect = e-180
 Identities = 354/378 (93%), Gaps = 20/378 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctaggtgtgaaggaagatactctcattatagggggcagaacgggaccatcagttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agtctaggtgtgaaggaagatactctcattatagggggcagaacgggaccatcagttatt 299

                                                                       
Query: 61  gtactattacgtatttatgtgcatagtgctttttttgtttctctgcaatgggcacctgag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 298 gtactattacgtatttatgtgcatagtgc-ttttttgtttctctgcaatgggcacctgag 240

                                                                       
Query: 121 ctataatttactaagaagtgacttgacttgttaactatattttcgtagtactggggttaa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtataatttactaagaagtgacttgacttgttaactatattttcgtagtactggggttaa 180

                                                                       
Query: 181 atgtagggcgttgtgcatggtaggtaagtatactaccactgagtcttatccctagctctt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 179 atgtagggcgttgtgcatggtaggtaagtatgctaccactgagtcttatccctagctctt 120

                                                                       
Query: 241 gaccagttcctattcaattttggcaaaccgggataacacctaagcagtggtaatgactaa 300
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gaccagttcccattcagttttggcaaaccgggataacacctaagcagtggtaatgactaa 60

                                                                       
Query: 301 tctgttcttgctccactccaatgatcttttagactttgtacacttgaaccttgaaaagtc 360
           ||||                   |||||||||||||||||||||||||||||||||||||
Sbjct: 59  tctg-------------------atcttttagactttgtacacttgaaccttgaaaagtc 19

                             
Query: 361 atccattctcttttataa 378
           ||||||||||||||||||
Sbjct: 18  atccattctcttttataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 794
Length adjustment: 9
Effective length of query: 386
Effective length of database: 785
Effective search space:   303010
Effective search space used:   303010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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