BAC Information

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BAC

Clone NameMSMg01-442J02
ChromosomeX (Build37)
Map Location 39,910,456 - 39,910,736
singlet/doubletsinglet
Overlap geneOdz1
Upstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442J02.T7 (MSMg01no442_j02.b1)MSMg01-442J02.TJ (MSMg01no442_j02.g1)
ACCAG532184AG532185
length777780
length of high quality
(start - end)
359 (51 - 409)281 (83 - 363)
definitionCHROMAT_FILE: MSMg01no442_j02.b1 PHD_FILE: MSMg01no442_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:47 2005CHROMAT_FILE: MSMg01no442_j02.g1 PHD_FILE: MSMg01no442_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCCCAGATTTCCTAATATTCACTAGGATATCTCCCTCCAC
AAAAGTATATAAGCAGTAAAAACTAAGGATAATCAGTCTCATACAAGCCA
AGCTTTAAAGACACAGACAAGCCCAGTAGCCTGGAAGAAGCAGCAACCAG
CAAAGCAGCCTGATCATGACAGAGAACATCTAAACTGCCTAGAAGATACT
ACAATGAGTTGAATTTCCTAAAAGAATTCCAAGCCAATTGAGCCACCTGG
AAAGGACACTGTCCAACCTGTTGAGCTGCCTGTAGATTGTGTCACCAGCG
CTAAGATGAACTTTGGTGATAGAGATTTCTTTGTGTTATTCACCATTGTG
GACACGTGTAGTATCCATAATTTGATCTGTCATCAATTTCCTATCTGGAG
TGAGTAGACATGTGTGCCTCTCCACCATATTTCTGCCAACTACAATGACC
TGAGGCCGAACGATTATGTCATCTTTCCGCCACTTGCTTTTTAACAACTT
TCTTTCCATGGCGAACAGCCACTATTTTTTTTCCCCTATTTTTTCCACGT
TTATTTTTCTTCTTTTTTTAATTCTCTGTCTTCTTCTTTTCCCCCCCCTT
TTCTTTTTTCCCGGCCTCTCTTTTCACTCTCCTTTTTCCTTAGTATCCCG
TCGCACTCTTTCCCCTCTCTTTCCTTCTTTCCCCTCTATTCATCTCTCCT
CCTCTCCCTATCTCTTTTTCCCCCCAN
TTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATGACTTCCTTGAGC
TGTGCTGTTTTACAGAAAAAATATATATCTGGTAATGAATCACCAGGAGG
GAAACCTGATTTATGAATCGTGTCCTGCTGTGTGCAATGTTCCAGGGAGG
CCTCTGCAATTTGGGTCGATCCCACTCCCGGCGATGAATGATGAAAACCA
GCAGAGGGTGCTGTTGTCAAAGACAAAGGAGCCACAAAAGGGCCTTCAAA
GCCCAAGCAGGCCAATCAACTGACTTTGTTTTGTGATGGGAAATATGATC
ATTTGCTGCTGTTTAAGTTGCCAAATTTGAAATGAATGAATCATTCTTCC
AACAAAACGAACAAGCATAGAGGATAATGGAAACTTGTTCATCAAAACGT
TTCTGTAGGCCCTCGATCTTGGTCTCACCCTAATTCTTTTTATCTTTCCG
GAGCACATTGTACTAATTGTTTCCGCATTTTTGTTTTTATTATTAATACT
TCTTTTCCTTTTTTTTCCTTTCTCTTTCTCCCCTTTTTCTTTTCTCCCTC
TTTTCCCTTTCTTTATTTTTCTTTTTGTCCCTGCTCCATCCCCCACCCTC
TTTCTTTTTTTTTTTTTTTTTTTCCTCTCCCCCACTCTTTCTCTTCCCTA
TTCCTTTTTTTTTTTCCTCCCTCCCCCTCTCTTCCCTTCTCTTTTCTTTT
TCCGCCCCCCCTTTCCCTTTCTCCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_j02.g1 MSMg01no442_j02.g1 CHROMAT_FILE:
MSMg01no442_j02.g1 PHD_FILE: MSMg01no442_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:47 2005
         (281 letters)



>mm_chrX_39910256_39910936
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgacttccttgagctgtgctgttttacagaaaaaatatatatctggtaatgaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatgacttccttgagctgtgctgttttacagaaaaaatatatatctggtaatgaatca 260

                                                                       
Query: 61  ccaggagggaaacctgatttatgaatcgtgtcctgctgtgtgcaatgttccagggaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggagggaaacctgatttatgaatcgtgtcctgctgtgtgcaatgttccagggaggcc 320

                                                                       
Query: 121 tctgcaatttgggtcgatcccactcccggcgatgaatgatgaaaaccagcagagggtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcaatttgggtcgatcccactcccggcgatgaatgatgaaaaccagcagagggtgct 380

                                                                       
Query: 181 gttgtcaaagacaaaggagccacaaaagggccttcaaagcccaagcaggccaatcaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgtcaaagacaaaggagccacaaaagggccttcaaagcccaagcaggccaatcaactg 440

                                                    
Query: 241 actttgttttgtgatgggaaatatgatcatttgctgctgtt 281
           ||||||  |||||||||||||||||||||||||||||||||
Sbjct: 441 actttgcattgtgatgggaaatatgatcatttgctgctgtt 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)