BAC Information

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BAC

Clone NameMSMg01-444F15
ChromosomeX (Build37)
Map Location 17,271,670 - 17,271,991
singlet/doubletsinglet
Overlap genenone
Upstream geneMaob, Ndph, LOC100043063, Efhc2, Fundc1, EG278181, EG668994
Downstream geneEG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444F15.T7 (MSMg01no444_f15.b1)MSMg01-444F15.TJ (MSMg01no444_f15.g1)
ACCAG533539AG533540
length1,022741
length of high quality
(start - end)
---320 (323 - 642)
definitionCHROMAT_FILE: MSMg01no444_f15.b1 PHD_FILE: MSMg01no444_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:14 2005CHROMAT_FILE: MSMg01no444_f15.g1 PHD_FILE: MSMg01no444_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTTCATAGCGCAACATACGAAGCTGGAGGGCGCCGATCTTCCCAGTAC
AATGGGGGTATCTTGCTGCCGCGCCGTCTCACTCGGGAGGGTCCACCGTG
TTTACAACTCGCGGGTGGCGAAGGTGATGATATTGTACGGCGTGCATGCC
AGACGACCCGGAGGCCCTTGTGCCAGGCGCCTAGTGTTTGTATCCGTCTA
TGCCCCCAGTTAGCCGCGTTAACCTTAGGAATGCGACCTCCGCGGAAGCT
GTTGTACATCCACTTACCTACGCCGGTTTTTGATATTTATTATACTAGAG
CCCCGTATGACCGGACTATATCGCCTCTTCGATGTGGAGACAAAATGTAT
TACGCGTTATTTCATCTGCTCACATCGTCCCCCGTACCGCATCAGCGGCC
ATATGGGGGTGAAAGCCTTTGTTTATTCGCCACGCGTTTTGCTTTTGGTT
AGAGAGCGCCAGGGAGGGGCCCGATGGATTAAAGATCGTATGTGGGGGGG
TGATTGTGTACCGCCGGCCGCCCCCGCGCGAACCACTTTCGTTATCACGC
GGGGTAAGACGGAGGGCGCGCCCCCATACACAGAAAGGAGGGGTGGTGGC
GAGCGTGTTGTAAGCTAGGGCCTTTGGCGTGGGTATCCCATGTGTGACAC
TTGAGTTTAACACAATTATACGTGCGGCGCCGTTAGTAATTAGGCGGGGT
TATTGCGGTTTAGCGACCGGGTTGGGGCCGCCTTTGTATTATGTGCCTTT
TTGTGCGCCCCGCCCGTGTGAATACGGTGGTCCGCGCAGTCGCCTGTGTT
TATTAATGGCGCTAGTCGAGTTTTCGGCGCCGCATTTATTCGCACCGCGC
CCGGACCCCCGCCGATTATTATATTTTCTCCATATTTGTTTTCGCCGGCG
ACACTGGCCCGCACGAGATCATGGCACCATTGTGCGCAGCCAATAACGCG
CGGTGGGCCCGGGCGAGAGGGTGTGTTGGCACACACACCCTGGGTGTGTG
TCTATATCTCCTGCGCCCGCGN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTCTCTATTTATTCTGGGTTAGGG
ATGGCCATGGGAGAAATTGGAGGGTACAAGTAAGACCGAAAGGAAAGCAG
ACACCCAATTTTAGTACAATTCTACTGAGTCATCACAAGCCATCTAATAT
GCATTTATGAGTGGCAATAGTTGGGCCTACAGCACTTCTGAAACTGACTG
GCCCTTCCTCAGTATCTCTGAATGCAGGGTGAACCTTGTATGAAGTTCCA
TGGAGAATCCCACCATTTTTCTACAAGTCACCCACACCTTTGAAGTTGCA
GTGAGAGACAGATGTGTGTTTCAGTGTGCTATCCATGTGACTACTATGAG
TAATTCTGATGACAGACAAATGGCAGCTGCAGTTCTTTCATGGTCTTGTT
GACTTCATATCATTTTTCTTTCCACAATAATTTAAAGGTATACCTGAGGC
CCAACATCAGAAGCAGAAGCAAGAGATATAACCTACAAAACCAGCCAGGA
GCATGGCTCTGTGTAAAGCACTGGAAAAACATATGAGGGCTCTAGATTTC
ATGCCTAGCACCACAGGAAAAGAAACTGCCCAACTTGGCATTAGAAGCCT
TTATAAACTAAAGCAAATCTTCGTTACTCATGGCGGCTGCGCTTCTTTGA
TATAACTTTAATACTATCAGGATGTTACGAATATTAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_f15.g1 MSMg01no444_f15.g1 CHROMAT_FILE:
MSMg01no444_f15.g1 PHD_FILE: MSMg01no444_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:14 2005
         (320 letters)



>mm_chrX_17271470_17272191
          Length = 722

 Score =  611 bits (316), Expect = e-179
 Identities = 320/322 (99%), Gaps = 2/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagtcacccacacctttgaagttgcagtgagagacagatgtgtgtttcagtgtgctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acaagtcacccacacctttgaagttgcagtgagagacagatgtgtgtttcagtgtgctat 463

                                                                       
Query: 61  ccatgtgactactatgagtaattctgatgacagacaaatggcagctgcagttctttcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccatgtgactactatgagtaattctgatgacagacaaatggcagctgcagttctttcatg 403

                                                                       
Query: 121 gtcttgttgacttcatatcatttttctttccacaataatttaaaggtatacctgaggccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtcttgttgacttcatatcatttttctttccacaataatttaaaggtatacctgaggccc 343

                                                                       
Query: 181 aacatcagaagcagaagcaagagatataacctacaaaaccagccaggagcatggctctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aacatcagaagcagaagcaagagatataacctacaaaaccagccaggagcatggctctgt 283

                                                                       
Query: 241 gtaaagcactggaaaaac--atatgagggctctagatttcatgcctagcaccacaggaaa 298
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtaaagcactggaaaaacatatatgagggctctagatttcatgcctagcaccacaggaaa 223

                                 
Query: 299 agaaactgcccaacttggcatt 320
           ||||||||||||||||||||||
Sbjct: 222 agaaactgcccaacttggcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space:   221743
Effective search space used:   221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)