BAC Information

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BAC

Clone NameMSMg01-444J05
ChromosomeX (Build37)
Map Location 64,296,278 - 64,296,705
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk2, LOC666824, LOC627734
Downstream geneEG666828, Gm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444J05.T7 (MSMg01no444_j05.b1)MSMg01-444J05.TJ (MSMg01no444_j05.g1)
ACCAG533710AG533711
length764729
length of high quality
(start - end)
426 (70 - 495)241 (82 - 322)
definitionCHROMAT_FILE: MSMg01no444_j05.b1 PHD_FILE: MSMg01no444_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:31 2005CHROMAT_FILE: MSMg01no444_j05.g1 PHD_FILE: MSMg01no444_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATCCGCGGAATTC
CAGGTACAAATCACACAGAGATAATACCACACACACACACACAGTGACAC
AGACATACATACAGTGAATGTTTTCTTTTGATAATTTATTATTTTCAGTA
TTTAGTCACAGTTATAAAATACTAATGCATGCATACTAATATATATGCAT
TGAGCTGCATAATAAGATCTTCAACAATCCTATCACTAGATCACTTTATA
GCCAAACTCAAAACTATACCACTTCCTGAATATGCAACAATTTGTATGCT
TCAATAAATGTGAATCATTTTTGTACCTAAAATATCCTAACCTACTCCTC
CCTCCCCTCACAGGGATAGCTCAAGTGTCATTTTTCTCTTTATTGATCTT
TTCCATCACTGGTGGAACTAATTGCTCCCTTGTTTTTAATCCCTACATAT
ATTTCTCTTTTACAATACTTGTCATAAAATTGCAATTGCTTTTAAAAATG
TCCACCCATCACATAACGAATGAACTGTTCAAAGCAGATATTATGTCTTG
CTCATCTCACAACAAAGAACAATATATGTTCACTAATAGCTGCTGACTGA
AAGTCGAACAATTTTACCTAAATGTTTTAAACACATGTTTCCCCCCTCCT
TACCCCTTTTTTTTTCCCATTATTTATCTAAATCAACACCTTGGCCCGCA
CTTTCCCCACTAGGTTTACTTCCTTCCGTCTATTGCAACGCCATTTATTC
ATCTTTCACCACCT
NNCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACCCAAAAAATTCAATGAAAATGAAAGCACAA
CCTACACAAACGTATTGGATACTATGACAGCAGTGCTAAGAGGAAAATTC
ATAGCAGTAAGTGCCTTCAGAAAGAAATTGGAAAGCCAGGCAGTGGTGGC
GCATGCCTGTAATCCCAGCCCTTGGGAGGCAGAGGCAGGCAGATTTCTAA
GTTCTATGCCAGTCTGGTCTACAGAGTAAGTTCCAGGACAGCCAGGGCTA
TACAGAAAAACCCTGTCTCATTAATCAATTAGAAAGAAAGAAAGAAAAAA
AAGAAATTGGAGAGATTCTCTCTATACTAGCAAATTAAAAACACACCTGA
AAGCTTCAGAACAATGCAATCACACCCAAGAGTAGAAAACAGGAAATAGC
CAAACTCAGGGTTGAAATCAACTAATCAGAGGAAAGGAAAACAATACAAA
GAATCAACAAAACCAACAGTTGGTTCTTTGAGAAAATCAACTAGATAGAT
TAATCTTTAGACATATACTATAGGGCACAGAGACAGTATCCAAATTAACA
CAATCACGACTGAAAAAGGAAGACATAACAGACAATAAGGAAATTCAAAA
ATCATGTCTTATTATTATAAAGCCTATACTCAATGAACTGGAACACCTAC
ATAAAGTTGGTGATATTTTCTAGACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_j05.b1 MSMg01no444_j05.b1 CHROMAT_FILE:
MSMg01no444_j05.b1 PHD_FILE: MSMg01no444_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:31 2005
         (426 letters)



>mm_chrX_64296078_64296905
          Length = 828

 Score =  777 bits (402), Expect = 0.0
 Identities = 421/428 (98%), Gaps = 2/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataatac--cacacacacacacacagtgacacagacatacatacagtgaatgttttctt 58
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gataataccacacacacacacacacagtgacacagacatacatacagtgaatgttttctt 569

                                                                       
Query: 59  ttgataatttattattttcagtatttagtcacagttataaaatactaatgcatgcatact 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttgataatttattattttcagtatttagtcacagttataaaatactaatgcatgcatact 509

                                                                       
Query: 119 aatatatatgcattgagctgcataataagatcttcaacaatcctatcactagatcacttt 178
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatacatatgcattgagctgcataataagatcttcaacaatcctatcactagatcacttt 449

                                                                       
Query: 179 atagccaaactcaaaactataccacttcctgaatatgcaacaatttgtatgcttcaataa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atagccaaactcaaaactataccacttcctgaatatgcaacaatttgtatgcttcaataa 389

                                                                       
Query: 239 atgtgaatcatttttgtacctaaaatatcctaacctactcctccctcccctcacagggat 298
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgtgaatcattagtgtacctaaaatatcctaacctactcctccctcccctcacagggat 329

                                                                       
Query: 299 agctcaagtgtcatttttctctttattgatcttttccatcactggtggaactaattgctc 358
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 agctcaagtgtcatttttctctttattgatcttttctatcactggtggaactaattgctc 269

                                                                       
Query: 359 ccttgtttttaatccctacatatatttctcttttacaatacttgtcataaaattgcaatt 418
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccttgtttttaatccctacatatgtttctcttttacaatacttgtcataaaattgcaatt 209

                   
Query: 419 gcttttaa 426
           ||||||||
Sbjct: 208 gcttttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 828
Length adjustment: 9
Effective length of query: 417
Effective length of database: 819
Effective search space:   341523
Effective search space used:   341523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)