BAC Information

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BAC

Clone NameMSMg01-444M02
ChromosomeX (Build37)
Map Location 113,665,701 - 113,666,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039277, Cpxcr1
Downstream geneEG624153, LOC100039300, EG665045, LOC100039319, LOC624284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444M02.T7 (MSMg01no444_m02.b1)MSMg01-444M02.TJ (MSMg01no444_m02.g1)
ACCAG533847AG533848
length819732
length of high quality
(start - end)
---538 (83 - 620)
definitionCHROMAT_FILE: MSMg01no444_m02.b1 PHD_FILE: MSMg01no444_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:45 2005CHROMAT_FILE: MSMg01no444_m02.g1 PHD_FILE: MSMg01no444_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAACATTTGTCCTCGTTAAAAGAACGCACCACTGTTTCCAAAACCCGCG
GCAACACAGCCCCCTTTTTTCCCCTCGCCGTGTCCCCCTCCCCTCTGTTA
CAGACATCTCGATGCCCCACTTCTACCGTCGTCCTGACCACAGCTATCGA
TGTTATCTCAGACACTCCCAACCCCATACCCCGATTATTCCCAAACAACT
AACTCTTAACCATGCTTTGGNACANGCCTGTTAACCCTTTCCCTGCTTCC
CCCCTAGANNNNTNANNCCTCTTCTNNNNNNNNNCTCTAATAATTTGCCG
GCCGCCTAATACGAACTCACCCTATAGGGTTGCAGNNATCCGNCGGGNNA
ATTCCCTGNCACCNTAAAAACTCTCTCCCCTGGGCCCCCCTTGTTGGGGG
GTTTTTTTTTTTGGTTTTGTTTTGGTTTAATTTTTTTGCCCTTTTGTTTT
TTTAATCTTGGNAAGTATTTTTAAATGGNNAAGGATTTCCTATTTTTTCC
TTAAGGGGTTTTATGCCCATTCCGGGTTAAAAATTTTAACCCCGAAACCC
TTGAATTTAAAATTTTTGGGGAAAAATAGGGAAACTCTCGGTTTTAAAAA
AAAACCTCCCCCCTTTTCCCCTCCCCAAAATTTTTTCCCCCCTTTTTTTT
TAATGGGCCCAAAAACCCTTTTTTTGTTTTTTACCCCACCCCCCCAAAAA
ATATTTTTTTTTTTTTTAAAAATTTTCCCCCCCGCTTTCCTCGGGGGGGA
AAAAATTTCTTCTCCCCTCTTTTCCAAATTTTTCTGTTTTATTTTGCCAA
AACACTTTTCTTTCTCCAC
NTACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGTTCAACAAGCTG
AAGGGCCCAAGTTAGGACACCTCAGTCGCACTTATGAGGGAGAAGAAAGA
AACCACAAAGGAGAAGGGACAGAAGGACCTAGGAGAGAAAGGGGACTGGG
GGGGGGTGTTGCAAAAGGGGAACATTGTTGCGCCCACCTCAGCCAGCAAG
GAAGACACAACACGGTCGGATTCTTCTCAACAGCCTTTATTGCAGGAATG
CTTCGAACTTGCCCTGCAACAGCGTTTATGCTCCAAATAGCTCCTTACCA
TCTTAAACTTCTCTATGGTTTTTCTTTTTCTCCCCTTTTTTTCTTTCTCT
TTTCTCTTTTTCTCTGTTCTTTTTCTTTTTTCTTTTTAAGCCCTTCTCTT
CAGACATACTCTCTTGTTGCTCTGTACAAAAAACAAAACAAGGATGAGAG
CTACTCATGCTGGGTCTATAGGCGGAAAAAACATATCCCCCTTTAAGCGG
GGATCAATTAGGGAGACTTACAAGTTCTGAATCCGCGAGGTTGTTTTCCT
CGGGTCCCCGTATGGGCCACCAAATGTGGGGCTCACCTCGGGCAGCAGGA
ACACACACTTGGTCTGATTCCTTCTCACAGCCTTTATTGCAGGATCTCCT
CGACGCTGCTAGGAGAACCCTTACGAATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_m02.g1 MSMg01no444_m02.g1 CHROMAT_FILE:
MSMg01no444_m02.g1 PHD_FILE: MSMg01no444_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:45 2005
         (538 letters)



>mm_chrX_113665107_113666044
          Length = 938

 Score =  619 bits (320), Expect = 0.0
 Identities = 341/352 (96%), Gaps = 8/352 (2%)
 Strand = Plus / Minus

                                                                       
Query: 187 gattcttctcaacagcctttattgcaggaatgcttcgaacttgccctgcaacagcgttta 246
           |||||||||||||||||||||||||||||||||      ||  ||||||||||||||| |
Sbjct: 938 gattcttctcaacagcctttattgcaggaatgc------ct--ccctgcaacagcgttca 887

                                                                       
Query: 247 tgctccaaatagctccttaccatcttaaacttctctatggtttttctttttctccccttt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgctccaaatagctccttaccatcttaaacttctctatggtttttctttttctccccttt 827

                                                                       
Query: 307 ttttctttctcttttctctttttctctgttctttttcttttttctttttaagcccttctc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ttttctttctcttttctctttttctctgttctttttcttttttctttttaagcccttctc 767

                                                                       
Query: 367 ttcagacatactctcttgttgctctgtacaaaaaacaaaacaaggatgagagctactcat 426
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 766 ttcagacatactctcttgttgctctgtacaaaaaacaaaacaagcatgagagctactcat 707

                                                                       
Query: 427 gctgggtctataggcggaaaaaacatatccccctttaagcggggatcaattagggagact 486
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 706 gctgggtctataggcggaaaaaacatatccccctttaaccggggatcaattagggagact 647

                                                               
Query: 487 tacaagttctgaatccgcgaggttgttttcctcgggtccccgtatgggccac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tacaagttctgaatccgcgaggttgttttcctcgggtccccgtatgggccac 595



 Score =  108 bits (56), Expect = 8e-28
 Identities = 65/68 (95%)
 Strand = Plus / Minus

                                                                       
Query: 148 gcgcccacctcagccagcaaggaagacacaacacggtcggattcttctcaacagccttta 207
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gcgctcacctcggccagcaaggaagacacaacacggtcggattcttctcaacagccttta 527

                   
Query: 208 ttgcagga 215
            |||||||
Sbjct: 526 ctgcagga 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)