Query= MSMg01no444_m04.b1 MSMg01no444_m04.b1 CHROMAT_FILE:
MSMg01no444_m04.b1 PHD_FILE: MSMg01no444_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:45 2005
(511 letters)
>mm_chrX_117161641_117162548
Length = 908
Score = 901 bits (466), Expect = 0.0
Identities = 496/508 (97%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaaataatattatcaatgcccatgaaaaaatctaccagctatccccatatctc 64
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaataatattagaaatgcccatgaaaaaatctaccagctatccccatatctc 264
Query: 65 tgagtaagggtaactgctcttaacaaaaaaaaaaaaagatttttgtgttaatgactgggt 124
||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct: 265 tgagtaagggtaactgctctt----agaaaaaaaaaagatttttgtgttgatgactgggt 320
Query: 125 tttccagtaataatacctttttccacttgttctcttgcaggtgcatggtagatctaactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccagtaataatacctttttccacttgttctcttgcaggtgcatggtagatctaactt 380
Query: 185 gtgagaacactggaaatatttacattgtagtcatgagtgaagacaacttcctaagctatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagaacactggaaatatttacattgtagtcatgagtgaagacaacttcctaagctatt 440
Query: 245 tcatttttgagaccgggtccctacactagagtacctcaagtccatcagtgacatcaatga 304
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatttttgagagcgggtccctacactagagtacctcaagtccatcagtgacatcaatga 500
Query: 305 gagaaagggattttaagccaattacaacagaaacacgacagacatactttgtagtccaaa 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gagaaagggattttaagccaattacaacagaaacatgacagacatactttgtagtccaaa 560
Query: 365 ccatttgattttacaagatccatttttgttctcttcagacatgtgtaaataaattaacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatttgattttacaagatccatttttgttctcttcagacatgtgtaaataaattaacaa 620
Query: 425 attctacatgccgcataaatgaaaagtacttcatttgtcagtgtgtttttcctgggtctt 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attccacatgccgcataaatgaaaagtacttcatttgtcagtgtgtttttcctgggtctt 680
Query: 485 -caattaaacactggagatggtgcctga 511
|||||||||||||||||||||||||||
Sbjct: 681 tcaattaaacactggagatggtgcctga 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 908
Length adjustment: 10
Effective length of query: 501
Effective length of database: 898
Effective search space: 449898
Effective search space used: 449898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_m04.g1 MSMg01no444_m04.g1 CHROMAT_FILE:
MSMg01no444_m04.g1 PHD_FILE: MSMg01no444_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:45 2005
(115 letters)
>mm_chrX_117298726_117299241
Length = 516
Score = 209 bits (108), Expect = 5e-59
Identities = 114/116 (98%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 1 aattgcactttaatatttc-gccatcttatatttagatttagtataagggtatttggatg 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aattgcactttaatatttcagccatcttatatttagatttagtataagggtatttggatg 257
Query: 60 ttgtggttgtttcataatggattttgtattttgtgtgtatattgaggcgactgtgt 115
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 256 ttgtggttgtttcataatggattttgtattttgtgtgtatattgaggtgactgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 516
Length adjustment: 8
Effective length of query: 107
Effective length of database: 508
Effective search space: 54356
Effective search space used: 54356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
