BAC Information

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BAC

Clone NameMSMg01-445F14
ChromosomeX (Build37)
Map Location 128,013,495 - 128,013,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665773, LOC665799, LOC670449
Downstream geneLOC245600, EG631264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445F14.T7 (MSMg01no445_f14.b1)MSMg01-445F14.TJ (MSMg01no445_f14.g1)
ACCAG534301AG534302
length765765
length of high quality
(start - end)
244 (63 - 306)410 (67 - 476)
definitionCHROMAT_FILE: MSMg01no445_f14.b1 PHD_FILE: MSMg01no445_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:31 2005CHROMAT_FILE: MSMg01no445_f14.g1 PHD_FILE: MSMg01no445_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTTTGT
TTTTCTAAGAACCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCTTTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGAA
TCTTTTCTTTGTTCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGGTTTAGCTCCCTTGTCGAAGATCAGTGACCCTAGGTGTG
TGGGTTCTTTTTCGGGGCTTCCAATCTATTCCATTGGTCTACTGGTCTGG
CCCTAAACCATTACCCTGTGGGTTTTTATTCCAATTGTTTTTTTTTTAAA
GACTTAATATATGGTTGGGCGCATCTCTCCAAAAGTCTTTCTATCCTGTA
TAGCATTTTTTTGCCTTCCCGCTCCTTTTTTTCCTCTTCCACATTTTTTT
TTCTATTATCCCTCT
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCCTCACTGGCAACTTTATACATCACCTCCCAT
TTTCTTTGGCTGATAACTTATCAACTTTAAGAAAAGGATATGCTGTAAAT
CTCCCACTTAAGAATTGGAAATACTATGAAAAGTGGGAAGGACTCATCAC
AATTGCTTCTTCTTATAATTTCAAAGGATAGGAAGATGCAGGCAGCAGGG
TTTCACTAAGACACATAAAGGTGACATCATTTCCCTCTAGTAAACATGGG
ATTTAGTCAATTTGTTTTTATTGATTTTTCCTTCATTCTTTACGTCTACT
CTTATTCATGATTTTTGCTCAAAAGAATACTATCTGAGGTGTAGCTCTGA
CTCTAAGTGGAGCAATGCCATTTTAAACTGCCTAAAATATAAAATTACAA
AATTACTCTTGTCCTCTCCCTTAAGTGTTAATCCTACTAGGCTGGTCAGT
CAACTAGCAAGAAGCCACTTCCCAGGAAACCCGATTCTATGAAATATATG
ACGATGACTGTAGGAAGAATATCTTTCCCCTCAATAAGATAATGTACTTA
TTTACCCAAAAGGCCCTCGGTTGTTGTAGTTGCCAAAATCTCCCTGTGGA
ACCTGCCTATTTGTCTGCGGGAATTTGAACAAACAAAAAAATTTTTTCCC
CCCTTTCTTAGGGGGCAAAAACCTAAACCTAATTTGTTATTTAACCCTTG
GTTGGGCCGCCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_f14.g1 MSMg01no445_f14.g1 CHROMAT_FILE:
MSMg01no445_f14.g1 PHD_FILE: MSMg01no445_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:31 2005
         (410 letters)



>mm_chrX_128013295_128014104
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctcactggcaactttatacatcacctcccattttctttggctgataacttatcaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tccctcactggcaactttatacatcacctcccattttctttggctgataacttatcaact 551

                                                                       
Query: 61  ttaagaaaaggatatgctgtaaatctcccacttaagaattggaaatactatgaaaagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttaagaaaaggatatgctgtaaatctcccacttaagaattggaaatactatgaaaagtgg 491

                                                                       
Query: 121 gaaggactcatcacaattgcttcttcttataatttcaaaggataggaagatgcaggcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaaggactcatcacaattgcttcttcttataatttcaaaggataggaagatgcaggcagc 431

                                                                       
Query: 181 agggtttcactaagacacataaaggtgacatcatttccctctagtaaacatgggatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agggtttcactaagacacataaaggtgacatcatttccctctagtaaacatgggatttag 371

                                                                       
Query: 241 tcaatttgtttttattgatttttccttcattctttacgtctactcttattcatgattttt 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcaatttgtttttattgattttttcttcattctttacgtctactcttattcatgattttt 311

                                                                       
Query: 301 gctcaaaagaatactatctgaggtgtagctctgactctaagtggagcaatgccattttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gctcaaaagaatactatctgaggtgtagctctgactctaagtggagcaatgccattttaa 251

                                                             
Query: 361 actgcctaaaatataaaattacaaaattactcttgtcctctcccttaagt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 actgcctaaaatataaaattacaaaattactcttgtcctctcccttaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)