XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
TCTTTTCCTGGCTTCCATTTACACTAGGCTTACATGTAGTGCACAGAAAT
ACATGTACACAAAACACACAATCACATAAAAAACTTAAAACAAATCTTTA
GAGTATCAAATATAATACAAATAGTAAGAAATCATCATGAAAAATATAGT
AGAGTAGGAAAACAGATGCTAATAAAAATAGTAAACTAGTGTAGACTTTT
TTAGTTAAATTGTATCTTACTATTACAAATGTAGGTATTTAAGGTATAGT
GATAACATATTTTTTTATAGTGCACATTGTAAAACAAATGTTAGAAGGAT
ACTCAGTACCCTATCAATTTTATTCCCACAATTCCACATCTAACCAGTTT
ACAGAAGTCACCTTGCAGCAAGAGAACTGACTCATTTTGGCACCATGGAG
TTTGAGATTTTAAAAGGTTTCTTGCTTTTATAAAATCATACTAGATGAAG
GTTAAAAGTATAATTGGAGAAACCTATATGTTCAGATATCAAGGTGTTAC
AAATAAAACAAGTCCTATAGTTTCACCTCCATGGAGCTGTAGACAACATT
TACCTGGGACTAAGAGGGGTTATAAGTGCTTTTGACACTTTTAGTTTAGG
GCATTTTTTTGGCATTCCTGTGAGTGGAATACTTCTACTTTTCCGGGGTT
CATCAATTCTTAGATACCTTCTTTTGAAAAAAATTATTTTT

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCAC
TTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGAGGATCTATTTCTTTTTCTGCCAGGTGGGGCAGTCTCTGGATGGCCT
TTCCTTCAGTCTCTGTTCCACACCTTGTCTCTGTATTGTAGTCTTTGTCC
TGTGAGTATTTTGTTTCCACTTCTAAGGAGGACTGAAGTGTCCTCTCTTT
GGTCTTCCTTCTTCTGAGCTTCATATGTCCTGTGAATTATATTTTTGGTA
TTCAGAGCTTTTGGGCTAATATCCACTTAGCAGTGAGTGCATACCATGTA
TGTTATTTTGTGACTGGGTTACCTCTCTCAGGATGATATTTTCTAGTTCT
ATCCATTTGCTGAAGAATTTCATGAAGTCATTGTTACATGTTGGAACATC
TTTTAAGGATATGCCCATGCAGTGTTATAGCCTGGGGCCTCAGGTAATAC
TAATGCCCCATTTTCTGGAGAGATTCTCTAACTGATTTCTCAAAGTGTGG
TGGTCAAGTTTTGCCCCTCTCCTTATTATGGTGGTGAGCGTCCCTCTCTC
CCTCAATCTTTTTCCCCCCCTTGTTGTGTTCCGTTTTTTACTGCCCTTTC
CATG

Query= MSMg01no445_o13.b1 MSMg01no445_o13.b1 CHROMAT_FILE:
MSMg01no445_o13.b1 PHD_FILE: MSMg01no445_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:17 2005
         (544 letters)



>mm_chrX_152647562_152648505
          Length = 944

 Score = 1015 bits (525), Expect = 0.0
 Identities = 540/545 (99%), Gaps = 2/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatttacactaggcttacatgtagtgcacagaaatacatgtacacaaaacacacaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatttacactaggcttacatgtagtgcacagaaatacatgtacacaaaacacacaatc 260

                                                                       
Query: 61  acataaaaaacttaaaacaaatctttagagtatcaaatataatacaaatagtaagaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acataaaaaacttaaaacaaatctttagagtatcaaatataatacaaatagtaagaaatc 320

                                                                       
Query: 121 atcatgaaaaatatagtagagtaggaaaacagatgctaataaaaatagtaaactagtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatgaaaaatatagtagagtaggaaaacagatgctaataaaaatagtaaactagtgta 380

                                                                       
Query: 181 gacttttttagttaaattgtatcttactattacaaatgtaggtatttaaggtatagtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttttttagttaaattgtatcttactattacaaatgtaggtatttaaggtatagtgat 440

                                                                       
Query: 241 aacatattt-ttttatagtgcacattgtaaaacaaatgttagaaggatactcagtaccct 299
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaca-atttattttatagtgcacattgtaaaacaaatgttagaaggatactcagtaccct 499

                                                                       
Query: 300 atcaattttattcccacaattccacatctaaccagtttacagaagtcaccttgcagcaag 359
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 atcaattttatttccacaattccacatctaaccagtttacagaaatcaccttgcagcaag 559

                                                                       
Query: 360 agaactgactcattttggcaccatggagtttgagattttaaaaggtttcttgcttttata 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 agaactgactcattttggcaccatggcgtttgagattttaaaaggtttcttgcttttata 619

                                                                       
Query: 420 aaatcatactagatgaaggttaaaagtataattggagaaacctatatgttcagatatcaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatcatactagatgaaggttaaaagtataattggagaaacctatatgttcagatatcaa 679

                                                                       
Query: 480 ggtgttacaaataaaacaagtcctatagtttcacctccatggagctgtagacaacattta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtgttacaaataaaacaagtcctatagtttcacctccatggagctgtagacaacattta 739

                
Query: 540 cctgg 544
           |||||
Sbjct: 740 cctgg 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)