BAC Information

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BAC

Clone NameMSMg01-446A11
ChromosomeX (Build37)
Map Location 18,494,160 - 18,494,660
singlet/doubletsinglet
Overlap geneEG628855
Upstream geneEG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098
Downstream geneLOC385333, EG628871, LOC100043953, BC049702, LOC675558, LOC668995, LOC385336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446A11.T7 (MSMg01no446_a11.b1)MSMg01-446A11.TJ (MSMg01no446_a11.g1)
ACCAG534820AG534821
length718731
length of high quality
(start - end)
231 (76 - 306)574 (70 - 643)
definitionCHROMAT_FILE: MSMg01no446_a11.b1 PHD_FILE: MSMg01no446_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:26 2005CHROMAT_FILE: MSMg01no446_a11.g1 PHD_FILE: MSMg01no446_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTAAACGACNCACAAATGCCGAGCGGCGCGGAATCCATAAN
ATTACAATATAATAGCTGAGNAGNATTCCATTGTGTAAATGTACCACATT
TTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCT
GGCTATTATAAATAAGGCTGCTATGAACATAGTAGAGCATGTGTCCTTCT
TACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTACTGTGGGA
TCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACTGAATT
CCAGAGTGTTTTTATTTGCTTGCAATCCCACAAACAATGGAGGAGTGTTC
CCCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTTTGATC
TTAGCCATTCTGACTGGAGTGAAGTGGAATCTCAGTGTTGTTTTGATTTG
CATTTCCCTGATGATTAAGGATGTTGAACATTATTTCAGGTGCTTCTCTG
CCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGCTCTGAGCCCCAT
TTTTTACTGGGCGCATTTGACTTTCTGTAGTCCACCTTCTTGAGTCCTTT
AAATATACCGCATATTACTCCCCTATTTGATTTGGGCAACCTATTTTTTT
TTTTCCCAAACAGCTGGTCGCCTCTTTGTCCTATTGTCGGTGGCTTTTCG
TTTGCTTAAGCCTTCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACGAAAACATACATCTGAATGTTGACTATATATTAAAAATAGTT
AGTTACCAGGACTCAAACACCATGAGAAACATAATCACTGCCCTGATGTA
ATGCAAAATTTGGATATAAATTAGGAAAACCAATGATTTAATCTATAATA
AATACTATGAATAAAATGGTGTGCTGATAAGAACAATACATGAACTTCTT
TTGATAAAGTGGCTGTGAGAAGCAGAATATCAGGTGAGATATTTTAAGCA
CAACAAAATCTCCTANGGTGNAGTTAATAAGCTGCATACAGAAAGTTGTT
CTCAGCTTCTTCTAAGCTATTGTTATGGTCTGAATGTTTATTCTCCCACC
ATTTGTATGATAGTGCTTTAGTTCCCAGTGAAATATTATTAAGAAGTGGG
ACCCTCGGGGGATTAATTGCCTGATGAGGCAGAATTCTCAGAAATGGAAT
TGGTGCCATTACAGAAGAGGTCAGAAGTACCTTAGGTGCACTGTATGCCA
AATGAGAATGTAAAGAAGGCACAGTCTGACAATCGGGCCCCTATTAGACC
CCAAATCTCCTTGTGTCTTGATTTATGGATTCCCTGCCCCCAGATATGAT
AGTTTTTTTTTTCTGTTATTAACAAACTACCTAGTTTACATTACCATGTT
ACAATGTCCTAAGTGGCTTAAGATGCATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_a11.g1 MSMg01no446_a11.g1 CHROMAT_FILE:
MSMg01no446_a11.g1 PHD_FILE: MSMg01no446_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:26 2005
         (574 letters)



>mm_chrX_18494160_18495133
          Length = 974

 Score =  872 bits (451), Expect = 0.0
 Identities = 489/506 (96%), Gaps = 10/506 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaatgttgactatatattaaaaatagttagttaccaggactcaaacaccatgagaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tctgaatgttgactatatattaaaaatagttagttaccaggactcaaaaaccatgagaaa 442

                                                                       
Query: 61  cataatcactgccctgatgtaatgcaaaatttggatataaattaggaaaaccaatgattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataatcactgccctgatgtaatgcaaaatttggatataaattaggaaaaccaatgattt 382

                                                                       
Query: 121 aatctataataaatactatgaataaaatggtgtgctgataagaacaatacatgaacttc- 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 aatctataataaatactatgaataaaatggtgtgctgataagaacaatacatgaacttca 322

                                                                       
Query: 180 ---ttttgataaagtggctgtgagaagcagaatatcaggtgagatattttaagcacaaca 236
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aag----gataaagtggctgtgagaagcagaatatcaggtgagatattttaagcacaaca 266

                                                                       
Query: 237 aaatctcctanggtgna-gttaataagctgcatacagaaagttgttctcagcttcttcta 295
           |||||||||| || | | | ||||||||||||||||||||||||||||||||  ||||||
Sbjct: 265 aaatctcctatggag-aggctaataagctgcatacagaaagttgttctcagcaacttcta 207

                                                                       
Query: 296 agctattgttatggtctgaatgtttattctcccaccatttgtatgatagtgctttagttc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agctattgttatggtctgaatgtttattctcccaccatttgtatgatagtgctttagttc 147

                                                                       
Query: 356 ccagtgaaatattattaagaagtgggaccctcgggggattaattgcctgatgaggcagaa 415
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 146 ccagtgaaatattattaagaagtgggaccctcaggggattaattgcctgatgaggcagaa 87

                                                                       
Query: 416 ttctcagaaatggaattggtgccattacagaagaggtcagaagtaccttaggtgcactgt 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ttctcagaaatggaattggtgccattacagaagaggtcagaagtaccttaggtgcactgt 27

                                     
Query: 476 atgccaaatgagaatgtaaagaaggc 501
           ||||||||||||||||||||||||||
Sbjct: 26  atgccaaatgagaatgtaaagaaggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)