Query= MSMg01no447_b05.b1 MSMg01no447_b05.b1 CHROMAT_FILE:
MSMg01no447_b05.b1 PHD_FILE: MSMg01no447_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:48 2005
(553 letters)
>mm_chrX_5277891_5278841
Length = 951
Score = 816 bits (422), Expect = 0.0
Identities = 516/550 (93%), Gaps = 10/550 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgtttctcatgacaaaatttatcaaaggacctttacttgatatctcaaatgga 63
|||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct: 747 ggaattctgtttctcacgagaaaatttatcaaaggatctttacttgatatctcaaatgga 688
Query: 64 tagtgatcagttcgtacc-aatatgggcagttgccaacatgggaagaaataaaaaaaaaa 122
||||||||||||| | || |||||| | ||||||||||| ||||||||| ||||||||
Sbjct: 687 tagtgatcagttcat-cctgatatggacggttgccaacat-ggaagaaat--aaaaaaaa 632
Query: 123 taatgactacaaatacagatttagttcttgaagtattgagatcttcccccatggtaaaag 182
| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct: 631 t--tgactacaaatacagatttaattcttgaagtattgagatcttcccctatggtacaag 574
Query: 183 ttgatgagaagggagaaaaggtgagaccaagtcataagtgatgtattgtgattctcagag 242
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 573 ttgatgagaagggagaaaaggtgagactaagtcataaacgatgtattgtgattctcagag 514
Query: 243 agattcctgggaccacgcctgtagaggaagtgaaagctttgtttaaaaatgaaaactgcc 302
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agattcctgagacaacgcctgtagaggaagtgaaagctttgtttaaaaatgaaaactgcc 454
Query: 303 acaaagtgataagctacaagtttgcacacaacagcaactggtacatcactttccagtcag 362
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 453 ccaaagtgataagctgtgagtttgcgcacaacagcaactggtacatcactttccagtcag 394
Query: 363 acacagatgcacagcaggcttttaaatacttaagagaag---tcaaaacatttaagggca 419
|||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 393 acacagatgcgcagcaggcttttaaatacttaagagaagaagttaaaacatttcagggca 334
Query: 420 agccaatcatggcaaggataaaagccatcaatacattttttgctaagaatgcttatcgat 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 333 agccaatcatggcaaggataaaagccatcaatacattttttgctaagaatggttatcgat 274
Query: 480 taatggattctagtatgtatactcaacctattcagactcctacccaatatccctcaccag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taatggattctagtatgtatactcaacctattcagactcctacccaatatccctcaccag 214
Query: 540 tcttcatgca 549
||||||||||
Sbjct: 213 tcttcatgca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 951
Length adjustment: 10
Effective length of query: 543
Effective length of database: 941
Effective search space: 510963
Effective search space used: 510963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_b05.g1 MSMg01no447_b05.g1 CHROMAT_FILE:
MSMg01no447_b05.g1 PHD_FILE: MSMg01no447_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:48 2005
(508 letters)
>mm_chr3_56695424_56696331
Length = 908
Score = 922 bits (477), Expect = 0.0
Identities = 501/509 (98%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 1 ttaacagtaaatacccagtgcataccctggaacaaccctcctcaaagtatattccttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttaacagtaaatacccagtgcataccctggaacaaccctcctcaaagtatattccttggt 259
Query: 61 taggagactcactgactaaggtttctggggacttcctaccattccagccacttatttagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taggagactcactgactaaggtttctggggacttcctaccattccagccacttatttagc 319
Query: 121 tacaggtgttttgtgtggttattttcaaaaattcaacccaaatctgaactgtgttaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacaggtgttttgtgtggttattttcaaaaattcaacccaaatctgaactgtgttaagac 379
Query: 181 caccctgagaactgccctgcactgactgcagtgaatgttctgaaaactcgtaggtgtgtc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaccctgagaactgccctgcactgactgcagtgaatgttctgaaaactcgtaggtgtgtc 439
Query: 241 taaagtggactgttctgggattcttaatagaaaaagcacattgcaaaacagataggatgg 300
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 440 taaagtggactgttctgggattcttaatagaaaaaacacattgcaaagcagataggatgg 499
Query: 301 aatagttcttgtaatccaagtgctttggagctgagacaggaggatttcaagttcaaggcc 360
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 500 aatagttcttgtaatccaagtgttttggagctgaggcaggaggatttcaagttcaaggcc 559
Query: 361 agccagagctaaatagcaatgtcctgtctcaagacaaaacaaaa-taaaccaaattcatt 419
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 agccagagctatatagcaatgtcctgtctcaagacaaaacaaaactaaaccaaattcatt 619
Query: 420 tacttcattgtctaaaaaaagtacataattaatatttatcttataaaaaatggtcccttt 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tacttcattgtctaaaaaaagtacataattaatatttatcttataaaaagtggtcccttt 679
Query: 480 tctagtacattctgaccccagctttctaa 508
|||||||||||||||||||||||||||||
Sbjct: 680 tctagtacattctgaccccagctttctaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
