Query= MSMg01no448_b20.b1 MSMg01no448_b20.b1 CHROMAT_FILE:
MSMg01no448_b20.b1 PHD_FILE: MSMg01no448_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:15 2005
(511 letters)
>mm_chrX_22218289_22219196
Length = 908
Score = 924 bits (478), Expect = 0.0
Identities = 501/510 (98%), Gaps = 5/510 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatatttctatctggacatcgtgcttgctcaggacctttgccaattatgtctc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ggaattccatatttctatgtggacatcgtgcttgctcaggacctttgccaattatgtctc 830
Query: 64 ttgagtcaacattgagaaactcagaccatgggtgatattaatataattatgatggtaggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttgagtcaacattgagaaactcagaccatgggtgatattaatataattatgatggtaggc 770
Query: 124 tggaagattatttattagaataaaatat--tatatatatatgaataatatataaataata 181
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 769 tggaagattatttattagaataaaatattatatatatatatgaataatatataaataata 710
Query: 182 tcataaacaatacagtgtacacaataaataaaagtttaagtcgagacccatgtgggcaag 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 709 tcataaacaatacagtgtacacaataaataaaagtttaagtcgagacctatgtgggcaag 650
Query: 242 tgattattatttgcacagatggaagttctgtccaaactgactgaggagatggcattcaac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgattattatttgcacagatggaagttctgtccaaactgactgaggagatggcattcaac 590
Query: 302 atatattctctactatacctctcacaaacttgccaagattactatttgtgcataagagtt 361
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 589 atatattctctcctatacctctcacaaacttgccaagattactatttgtgcataag--tt 532
Query: 362 ttttgataacttcataaatgaggactatatatcattctcatcctctagctccctttctag 421
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 531 ttttgataacttcataaatgaggactatatatcact-tcatcctctagctccctttctag 473
Query: 422 gcttgttgtctcccttccaaagttatggtgtctagtttttgtctttcttttctttaagtt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcttgttgtctcccttccaaagttatggtgtctagtttttgtctttcttttctttaagtt 413
Query: 482 agtgtctcactatgtaaccctgactgttat 511
||||||||||||||||||||||||||||||
Sbjct: 412 agtgtctcactatgtaaccctgactgttat 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 908
Length adjustment: 10
Effective length of query: 501
Effective length of database: 898
Effective search space: 449898
Effective search space used: 449898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_b20.g1 MSMg01no448_b20.g1 CHROMAT_FILE:
MSMg01no448_b20.g1 PHD_FILE: MSMg01no448_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:16 2005
(446 letters)
>mm_chrX_22047072_22047917
Length = 846
Score = 843 bits (436), Expect = 0.0
Identities = 445/450 (98%), Gaps = 4/450 (0%)
Strand = Plus / Plus
Query: 1 ctaccttatgtgatctctttgcttactactttac----ttatgaccttgtgtgatccttt 56
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 197 ctaccttatgtgatctctttgcttactactttacttaattatgaccttgtgtgatccttt 256
Query: 57 tgcttactactctgcttaattactttcttgtgtgatctccttgtttactattttgcttga 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgcttactactctgcttaattactttcttgtgtgatctccttgtttactattttgcttga 316
Query: 117 ttactttgtctttgatctaagaactgaccatattttttggatatacctagaatgatataa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttactttgtctttgatctaagaactgaccatattttttggatatacctagaatgatataa 376
Query: 177 aagcaggccagtgagaaataaagctacttcaacctcagtacaggctggaataatgtaatt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagcaggccagtgagaaataaagctacttcaacctcagtacaggctggaataatgtaatt 436
Query: 237 ttgtctggttttctttttcaatactcacgccctcgcttgaaaccctgtatgactgactga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgtctggttttctttttcaatactcacgccctcgcttgaaaccctgtatgactgactga 496
Query: 297 gctggcaccccagacggcacttcaaagttgatcagactgcacttcaatgttggagcccaa 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 497 gctggcaccccagacggcacttcaaagttgatcagactgcacttcaatgttggaacccaa 556
Query: 357 gtacagaggataaagtgaaggatactgctgagaggcacactcgaaaaggaaaatggaagg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtacagaggataaagtgaaggatactgctgagaggcacactcgaaaaggaaaatggaagg 616
Query: 417 taagggaaaacaaaagctaaaggaaaataa 446
||||||||||||||||||||||||||||||
Sbjct: 617 taagggaaaacaaaagctaaaggaaaataa 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
