Query= MSMg01no449_k03.b1 MSMg01no449_k03.b1 CHROMAT_FILE:
MSMg01no449_k03.b1 PHD_FILE: MSMg01no449_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:18 2005
(321 letters)
>mm_chrX_13572383_13573109
Length = 727
Score = 534 bits (276), Expect = e-156
Identities = 314/332 (94%), Gaps = 16/332 (4%)
Strand = Plus / Plus
Query: 1 ccagaaaaag-aagtcccttc-ttgacatgttacaattagcacccatggagacagcagct 58
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagaaaaagcaagtcccttcattgacatgttacaattagcacccatggagacagcagct 260
Query: 59 tatgtacagtccactgtttgtaactactagttgggagttttggcatgaag-catttccta 117
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tatgtacagtccactgtttgtaactactagttgggagttttggcatgaaggcatttccta 320
Query: 118 tggtat-gtgctta-cagctagaagtcagaaatttacttctttataatgcaaaatttaag 175
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtacagtgcttagcagctagaagtcagaaatttacttctttataatgcaaaatttaag 380
Query: 176 gcttttcctgttt---tttttta---agactcattaaagcaaaaagcaaaaagcaataca 229
|||||||||| || | | ||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttttcctgattaagt-----acaaagactcattaaagcaaaaagcaaaaagcaataca 435
Query: 230 tttggaacaagagactacttacaggatacaaaaatgaggtcagcagggcagtaaagaaat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttggaacaagagactacttacaggatacaaaaatgaggtcagcagggcagtaaagaaat 495
Query: 290 gaaaacaattatataaagacttctgacttatt 321
||||||||||||||||||||||||||||||||
Sbjct: 496 gaaaacaattatataaagacttctgacttatt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 727
Length adjustment: 9
Effective length of query: 312
Effective length of database: 718
Effective search space: 224016
Effective search space used: 224016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_k03.g1 MSMg01no449_k03.g1 CHROMAT_FILE:
MSMg01no449_k03.g1 PHD_FILE: MSMg01no449_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:18 2005
(475 letters)
>mm_chrX_13740945_13741819
Length = 875
Score = 895 bits (463), Expect = 0.0
Identities = 472/475 (99%)
Strand = Plus / Minus
Query: 1 tcatacctacaagtatattttaagtatttcaatagatattaatttttaaataatgaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcatacctacaagtatattttaagtatttcaatagatattaatttttaaataatgaatta 616
Query: 61 agcaccttacataattattcaatatactgtctccacgggctgccgatatacattggcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agcaccttacataattattcaatatactgtctccacgggctgccgatatacattggcctt 556
Query: 121 ttacttctgtgtacaggcttcatttgttattatgaaaaatatactgctacataagttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttacttctgtgtacaggcttcatttgttattatgaaaaatatactgctacataagttcat 496
Query: 181 ttgccagataactaaaacataaaaggtctttgagaaataatgatatttatttagaatatt 240
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 495 ttgccagataactaaaacataaaaggtccttgagaaataaggatatttatttagaatatt 436
Query: 241 ttaaatatgtaacacttgttcttctttaacttctaaaagggaaacaaaacagaattcaac 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 435 ttaaatatgtaacacttgttcttctttaacttctaaaagggaaacagaacagaattcaac 376
Query: 301 ctgttttgacatgattgagagctacctcgaaacattactgattacacaaaaacaatagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgttttgacatgattgagagctacctcgaaacattactgattacacaaaaacaatagaa 316
Query: 361 tacaacaaaatcttttcttctaaatgatgtattagtctgttttttattactgtaacaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tacaacaaaatcttttcttctaaatgatgtattagtctgttttttattactgtaacaata 256
Query: 421 gagaaaatgcctactttggctcatgatttcaaatgttttatgccaaggtgactta 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gagaaaatgcctactttggctcatgatttcaaatgttttatgccaaggtgactta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
