Query= MSMg01no449_l01.b1 MSMg01no449_l01.b1 CHROMAT_FILE:
MSMg01no449_l01.b1 PHD_FILE: MSMg01no449_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:22 2005
(462 letters)
>mm_chrX_124837432_124838292
Length = 861
Score = 835 bits (432), Expect = 0.0
Identities = 451/458 (98%), Gaps = 1/458 (0%)
Strand = Plus / Minus
Query: 5 gaattcctttcctttttcaatttacttggttttgatttcttgagtttcaatcagttttgt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaattcctttccttttttaatttacttggttttgatttcttgagtttcaatcagttttgt 602
Query: 65 tttgtcttttctccatttattcaagtctttggtagagtattcttcaaattctttaaagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttgtcttttctccatttattcaagtctttggtagagtattcttcaaattctttaaagta 542
Query: 125 cttgaacatgtttctaactattcttttgaaatcatgttatgaattttatctcattgaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttgaacatgtttctaactattcttttgaaatcatgttatgaattttatctcattgaata 482
Query: 185 gttatgaatgacaatattactataagattgatttttgagagggacaatatattctctcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttatgaatgacaatattactataagattgatttttgagagggacaatatattctctcat 422
Query: 245 tttttccattacttttatggttttttgataagacatgggcatctagagttgggttgatgg 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 421 tttttccattacttttatggttttttgataagatatgggcatctagagttgggttgatgg 362
Query: 305 acacatcttttattgtttagttttttgggtttttgtgtgtttgtttgtttgaaattataa 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 361 acacatcttttattgtttagttttt-gggtttttgtgtgtttgtttgtttgaaattataa 303
Query: 365 gtacatcanncccgcccatttttctttcctccgtcaaaccttccattgtacctaccctac 424
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 302 gtacatcagtcccgcccatttttctttcctctgtcaaaccttccattgtacctaccctac 243
Query: 425 gtttcatttaaaaatcaagacctcctttttctcaactg 462
||||||||||||||||||| ||||||||||||||||||
Sbjct: 242 gtttcatttaaaaatcaaggcctcctttttctcaactg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space: 384652
Effective search space used: 384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_l01.g1 MSMg01no449_l01.g1 CHROMAT_FILE:
MSMg01no449_l01.g1 PHD_FILE: MSMg01no449_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:23 2005
(477 letters)
>mm_chrX_124787096_124787975
Length = 880
Score = 864 bits (447), Expect = 0.0
Identities = 473/485 (97%), Gaps = 8/485 (1%)
Strand = Plus / Plus
Query: 1 caatttttctaaaagaacacctagaattcaattatgttaaaatgtatttttggtagtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttttctaaaagaacacctagaattcaattatgttaaaatgtatttttggtagtgtc 260
Query: 61 tcattgaactttaaaaggaattcatcctagattggtaatgaaaacattgtgtttcaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattgaactttaaaaggaattcatcctagattggtaatgaaaacattgtgtttcaaaat 320
Query: 121 atttccagtaacatgagagccaagtttctatatctagatttctgtgtacaaagttgaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttccagtaacatgagagccaagtttctatatctagatttctgtgtacaaagttgaata 380
Query: 181 aatgaaatttattccttgaaaattagtacaatgtaatgtagcatgtagtacaatgtaatg 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aatgaaatttattccttgaaaattagtacaatgtaatatagcatgtagtacaatgtaatg 440
Query: 241 tagcatgttggaagtatttttt-ctaaacacaaatgttaaaaaataatatatctatgtct 299
||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tagcatgttggaagtctttttttctaaacacaaatgttaaaaaataatatgtctatgtct 500
Query: 300 gtaatattttctactaattttatatttttaaaagttggttcaaaccccatttcattgaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaatattttctactaattttatatttttaaaagttggttcaaaccccatttcattgaaa 560
Query: 360 tcttaaaaggccacattataactactaagtttctctctctct--ttctctgtctcttttt 417
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 tcttaaaaggccacattataactactaagtttctctctctctctttctctgtctcttttt 620
Query: 418 ttttttt-----ctagaaagaattcctcagtgtagtctctggatgttctggaactccctg 472
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ttttttttttttctagaaagaattcctcagtgtagtctctggatgttctagaactccctg 680
Query: 473 tgtag 477
|||||
Sbjct: 681 tgtag 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 880
Length adjustment: 10
Effective length of query: 467
Effective length of database: 870
Effective search space: 406290
Effective search space used: 406290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
