BAC Information

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BAC

Clone NameMSMg01-450O06
ChromosomeX (Build37)
Map Location 106,212,857 - 106,213,294
singlet/doubletsinglet
Overlap genenone
Upstream geneGm378, LOC668516, Gm379, Brwd3, 5730416F02Rik, Nsbp1
Downstream geneSh3bgrl, EG622976, LOC100042831, LOC213474, LOC245573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450O06.T7 (MSMg01no450_o06.b1)MSMg01-450O06.TJ (MSMg01no450_o06.g1)
ACCAG538509AG538510
length756744
length of high quality
(start - end)
115 (130 - 244)438 (76 - 513)
definitionCHROMAT_FILE: MSMg01no450_o06.b1 PHD_FILE: MSMg01no450_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:58 2005CHROMAT_FILE: MSMg01no450_o06.g1 PHD_FILE: MSMg01no450_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACAGATGCGC
GGAANCANTTCTTACCTAATACAAAGCATGAGATAAAAGTAATAAAACAA
AATTAAAAGCGATACTGATTTTGACAGATTAAAATCAATTATTAGCTCCA
AGGAAGGGCATGTATTTATAACCCATAATGTATTTATAACCCATAAATAT
ATAATAAATATATCAATAGGAAACAATGTAAAAATAAAGCATATGGAAAT
AATGATTATAATTTGTAAATACAAAAAATGTGATACTGACTAAACAGATA
CTTAAAGAGAATAGAAGGATTTCTAATTAGGACAAAAATGCGTTAATATC
ATAATTTTGATCATTACATAACAACATTATAATGAACAGAAGCTACCAAA
ATACCAAGCTATTTATGATTGGTTTAAAAGGCCAACAATAGGTCTGAGAA
GTAACTCAGGGCTCTAGTTCTTTGCCTATTGTATGCACTATACTGAACGA
AATATGCAGTAACATACGAAAAAGCAAACAGACTCTAAACTCTTGACAAT
ATCAGGAGCTGAACAGAACTACCGAGTACCACTAACCTATGCACTTTACT
TCAGCTTCTTTCCAAGTATTCCATATCCTCTACTAATCACTAATACCCTT
TTTGTGTTAACTTCTCATTATCCTTTCCCGTGACTCTTAGTCCCGCACCT
TGTTTATCATTCGTTATTCCTACCCCCCTTATCTTCATATATTTAATTCC
CCCCCT
GCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGCAGCCCCTGATAGGGTGCCTT
TTGAAGATGTGCTTCTAGTGGAAGAAAAAAATTGGAAAAAAAAGTAAATT
TTGATTTTAATATTTAAATCAATTACATTTTAAACTTTCAGACATTAAAG
CTTAGAAGCGACTAAATGGAGATTTTCTAGTTCAGTACTCTTGTAATGCA
GATCAGCACACTCAAGTACAGACAGCTTAAATGCATTGCCTGTGGCCATC
TATCAGAGGTGGTGCAGGGTTTTGTTTGTTTTGTTTTTCATATTTTGTTC
TGAAGATTTTATTTGTAGCTTGGATAGTAGCAGTTATACAGCCTCAACAG
AAATGTTAATGAATTGCAAGACATATTAGATAAACACAAATTTTGCTCAA
TTTCAAGAAGCACCCTTATTTCTGTTTGTTCATCTGAGATCCTGAATTTA
ATCCTTTTATCAGTTCTTAACCGCATCAAAAGCAGAAAATTTGTTGACTT
TATATTCTCCCTCTACCCCTCTCTCTGATAATTTCAGTGAACAAAGGTTT
ACCCATTAAAGTCTTCTAACACACTCTCATGTTTCCTTCAGTTATTTACT
AACACAATGCTTTCTCCAATACAATTGCCAGGTACCTCTCCTCAATGGCC
CTAAGCCCTCTACAGACTCTCCAGATTCAAGTACCCCGTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_o06.g1 MSMg01no450_o06.g1 CHROMAT_FILE:
MSMg01no450_o06.g1 PHD_FILE: MSMg01no450_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:58 2005
         (438 letters)



>mm_chrX_106212657_106213494
          Length = 838

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcagcccctgatagggtgccttttgaagatgtgcttctagtggaagaaaaaaattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcagcccctgatagggtgccttttgaagatgtgcttctagtggaagaaaaaaattgg 260

                                                                       
Query: 61  aaaaaaaagtaaattttgattttaatatttaaatcaattacattttaaactttcagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaagtaaattttgattttaatatttaaatcaattacattttaaactttcagacat 320

                                                                       
Query: 121 taaagcttagaagcgactaaatggagattttctagttcagtactcttgtaatgcagatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagcttagaagcgactaaatggagattttctagttcagtactcttgtaatgcagatca 380

                                                                       
Query: 181 gcacactcaagtacagacagcttaaatgcattgcctgtggccatctatcagaggtggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacactcaagtacagacagcttaaatgcattgcctgtggccatctatcagaggtggtgc 440

                                                                       
Query: 241 agggttttgtttgttttgtttttcatattttgttctgaagattttatttgtagcttggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggttttgtttgttttgtttttcatattttgttctgaagattttatttgtagcttggat 500

                                                                       
Query: 301 agtagcagttatacagcctcaacagaaatgttaatgaattgcaagacatattagataaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtagcagttatacagcctcaacagaaatgttaatgaattgcaagacatattagataaac 560

                                                                       
Query: 361 acaaattttgctcaatttcaagaagcacccttatttctgtttgttcatctgagatcctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 acaaattttgctcaatttcaagaagcacccttatttctgtttgttcacctgagatcctga 620

                             
Query: 421 atttaatccttttatcag 438
           ||||||||||||||||||
Sbjct: 621 atttaatccttttatcag 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)