Query= MSMg01no452_a20.b1 MSMg01no452_a20.b1 CHROMAT_FILE:
MSMg01no452_a20.b1 PHD_FILE: MSMg01no452_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:30 2005
(714 letters)
>mm_chrX_164587466_164588579
Length = 1114
Score = 1309 bits (677), Expect = 0.0
Identities = 699/711 (98%), Gaps = 9/711 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcttaattgagagctattgagaaacctgttaagcatgcacttaagtggactgc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 ggaattctcttaattgagagctattgagaaacctgttaagcatgcacttaagtggactgc 1007
Query: 64 agagaatccagacatttctcaatagtgctcagagtatattcaccccaacttattttcctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1006 agagaatccagacatttctcaatagtgctcagagtatattcaccccaacttatcttcctt 947
Query: 124 ctttatattaaatttccaaatacattgtcaaaaaaagaaaagaaaagaaaagaaaagaaa 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 946 ctttatattaaatttccaaatacattgtcaaa-----aaaagaaaagaaaagaaaagaaa 892
Query: 184 gaaaaaagaaagaaagaaagagcccacagtaggtcactgttgcctattagcaaacttagt 243
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaaa----aaagaaagaaagagcccacagtaggtcactgttgcctattagcaaacttagt 836
Query: 244 attgagccatatccaaatcactgttggggctttgtcattgtcaatggaagcagaaaggcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 attgagccatatccaaatcactgttggggctttgtcattgtcaatggaagcagaaaggcc 776
Query: 304 tcccagtgagtgtctgcagaaactcaactggaacacctgctactgaggatgaggtggggg 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tcccagtgagtgtctgcaggaactcaactggaacacctgctactgaggatgaggtggggg 716
Query: 364 cagggtagctgagtatgtaacatgtccataccttctggaggtgaagggatcttgcctgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cagggtagctgagtatgtaacatgtccataccttctggaggtgaagggatcttgcctgga 656
Query: 424 aatcacttgatttcaagaattagaaatctgctcaaactagctcacaagataggagtctat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatcacttgatttcaagaattagaaatctgctcaaactagctcacaagataggagtctat 596
Query: 484 gatacactaaacccgagtttgcttaaatctgtgattcatgttgtacacaggattaatgag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gatacactaaacccgagtttgcttaaatctgtgattcatgttgtacacaggattaatgag 536
Query: 544 aatgacacagagcaagtcactgcatctggtagccctttccttttctctttttaccttccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aatgacacagagcaagtcactgcatctggtagccctttccttttctctttttaccttccc 476
Query: 604 tgttagcagcccctaggatctctccaatctccattgcacctggtttcttctatggaacaa 663
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 475 tgttagcagcccctaggatctctcccatctccattgcacctggtttcttctatggaacaa 416
Query: 664 tctttactgttttaaaatattattaatattattatttattattattattcg 714
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tctttactgttttaaaatattattaatattattatttattattattattcg 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no452_a20.g1 MSMg01no452_a20.g1 CHROMAT_FILE:
MSMg01no452_a20.g1 PHD_FILE: MSMg01no452_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:30 2005
(683 letters)
>mm_chrX_164521497_164522578
Length = 1082
Score = 1201 bits (621), Expect = 0.0
Identities = 662/683 (96%), Gaps = 14/683 (2%)
Strand = Plus / Plus
Query: 1 taatttgttgtttgttttatatagattcatttcaggaaatgaggttgaatttttcagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatttgttgtttgttttatatagattcatttcaggaaatgaggttgaatttttcagccc 260
Query: 61 atagcatccattcagctttgtttcaccatgaggttatattctcccgctcaagattctaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagcatccattcagctttgtttcaccatgaggttatattctcccgctcaagattctaga 320
Query: 121 ataatcttaggtaattaagtgaaattttatttcaaatagaacaaacgaaaatttactccc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 321 ataatcttaggtaattaagtgaaattttatttcaaatagaacaaatgaaaa-ttactccc 379
Query: 181 tggcttttatactatggtatgtagtcaggatttatccccttacttatcctttcataacct 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 tggcttttatactatggtatgtagtcaggatttatccccttacttattctttcataacct 439
Query: 241 ccaacttttcaatgtccaagttactttattgaatttagagagagctatgtagatgtgaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccaacttttcaatgtccaagttactttattgaatttagagagagctatgtagatgtgaca 499
Query: 301 cattacaaaatgtagttatggattcttcctagattgtgtgagaaggtgcagtgcaaggta 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 cattacaaaatgtagttatggattcttcctagattgtgtaagaaggtgcagtgcaaggta 559
Query: 361 attttcctgtttcctgccattaaatgaggaatctactttctaggagctcaggtctgggct 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 attttcctgtttcctgccattaaatgaggaatctactgtctaggagctcaggtctgggct 619
Query: 421 ggtcttgtggttaaataaataaataaataaataaataaataaataaataaagtactatat 480
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 ggtcttgtggttaaataaataaataaataaataaataaa------------gtactatat 667
Query: 481 ctttcaaagctgggacttaagaagcttcagatttctacaaatatcacaatgccatctgtc 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 668 ctttcaaagctgggacttaagaagcttcagatttctacaaacatcacaatgccatctgtc 727
Query: 541 tgaagagcatcctctaagaaatgagtcccatctactatgtttgaaggtcaaagaccatta 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 728 tgaagagcatcctctaagaaatgagtcccatctactgtgtttgaaggtcaaagaccatta 787
Query: 601 gaagaagtgttcgcaactagaaaacacacccatgaggttttctggacctatctaattaac 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gaaaaagtgttcgcaactagaaaacacacccatgaggttttctggacctatctaattaac 847
Query: 661 tgtggcacatgtgaatgatacag 683
|||||||||||||||| ||||||
Sbjct: 848 tgtggcacatgtgaat-atacag 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space: 721456
Effective search space used: 721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
