Query= MSMg01no453_d14.b1 MSMg01no453_d14.b1 CHROMAT_FILE:
MSMg01no453_d14.b1 PHD_FILE: MSMg01no453_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:01 2005
(686 letters)
>mm_chrX_13354757_13355842
Length = 1086
Score = 857 bits (443), Expect = 0.0
Identities = 464/471 (98%), Gaps = 2/471 (0%)
Strand = Plus / Minus
Query: 4 ggaattctggattaatatttttgaggtgggtgggtggccccacccttcaactggggaccg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 ggaattctggattaatatttttgaggtgggtgggtggccccacccttcaactggggaccg 894
Query: 64 tgtctat-ctactggatatagtctctacaggttctatctccctaaattcctccagttgga 122
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 tgtctatcct-ctggatatagtctctacaggttctatctccctaaattcctccagttgga 835
Query: 123 tcctgggaaccccctgggtctctggcctgtgggactttctagtggctacccccagttccc 182
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 834 tcctgggaaccccctgggtctctggcatgtgggactttctagtggctacccccagttccc 775
Query: 183 cctctcccactgctacacacctactttcaaattcctgaccctctgtatttcaaccccctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cctctcccactgctacacacctactttcaaattcctgaccctctgtatttcaaccccctt 715
Query: 243 ctcctctcatatctgacctagttcttccccttcccctcctctccttttgtgtaggtattt 302
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctcctcccatatctgacctggttcttccccttcccctcctctccttttgtgtaggtattt 655
Query: 303 cctacaagttcaaacattccctcctagaggaaagacagaggtttataggatcagtgaaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cctacaagttcaaacattccctcctagaggaaagacagaggtttataggatcagtgaaac 595
Query: 363 tcacaaggcacaggaagttataagattctcttcacaaggttctataggaagccagcaatt 422
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 594 tcgcaaggcacaggaagttataagattctcttcccaaggttctataggaagccagcaatt 535
Query: 423 tctggggagagaagactggtaaactgcttccagagtccctaagtaaaacct 473
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tctggggagagaagactggtaaactgcttccagagtccctaagtaaaacct 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_d14.g1 MSMg01no453_d14.g1 CHROMAT_FILE:
MSMg01no453_d14.g1 PHD_FILE: MSMg01no453_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:01 2005
(683 letters)
>mm_chrX_13205895_13206977
Length = 1083
Score = 1266 bits (655), Expect = 0.0
Identities = 676/683 (98%)
Strand = Plus / Plus
Query: 1 taggggaagagtttgaaagacagactattattcagtcttataagatagggtaggatagga 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 taggggaagagtttgaaagacagactattattcagttttataagatagggtaggatagga 260
Query: 61 gctgggattagagacgtgaatttggggatcaacagccaagataatgaatgaatgaagttt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattagagatgtgaatttggggatcaacagccaagataatgaatgaatgaagttt 320
Query: 121 ctgagggagtgactactattagagaagacgatgggagttgggtctcagtgggtaaatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagggagtgactactattagagaagacgatgggagttgggtctcagtgggtaaatgga 380
Query: 181 gggcagaaagatcagaagaatctagcgaacggaaaccaatggtcagacagggaaacaagg 240
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 381 gggcagaaagatcagaagaatctagcaaatggaaaccaatggtcagacagggaaacaagg 440
Query: 241 tgagcatcagagtttgcatctcagaagccaatgggaagacatttttgtcaagaagaaatg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgagcatcagagtttgcatctcagaagccaatggaaagacatttttgtcaagaagaaatg 500
Query: 301 cttagtagtgatcagtgttactacagccatttaaattgagaagtgagaacagatgattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttagtagtgatcagtgttactacagccatttaaattgagaagtgagaacagatgattag 560
Query: 361 ctttggcagtttggaagtcaatagtaccaatgacaaaagtggtattggtggcatgataga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttggcagtttggaagtcaatagtaccaatgacaaaagtggtattggtggcatgataga 620
Query: 421 cataaaaatgtcctttggtctaggttctgcagggaatgggtgtggagacagtaagtaaag 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataaaaatgtccattggtctaggttctgcagggaatgggtgtggagacagtaagtaaag 680
Query: 481 ataagtttcaaagttttctgtgctaggaatggaggcaggggatgcagcgagaggatcatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataagtttcaaagttttctgtgctaggaatggaggcaggggatgcagcgagaggatcatg 740
Query: 541 tggaattgaagaagccccttttcaacagtgtaacacaattgcaggaaaatgaataaactt 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggaattgaagaaaccccttttcaacagtgtaacacaattgcaggaaaatgaataaactt 800
Query: 601 ccacatacctatcaccttgtatgaacaaatcctcttattctccaaagctttttattacac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccacatacctatcaccttgtatgaacaaatcctcttattctccaaagctttttattacac 860
Query: 661 tcttgtgtgtatgtccttgtgtg 683
|||||||||||||||||||||||
Sbjct: 861 tcttgtgtgtatgtccttgtgtg 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
