Query= MSMg01no453_m04.b1 MSMg01no453_m04.b1 CHROMAT_FILE:
MSMg01no453_m04.b1 PHD_FILE: MSMg01no453_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:44 2005
(642 letters)
>mm_chrX_20199319_20200361
Length = 1043
Score = 872 bits (451), Expect = 0.0
Identities = 460/465 (98%), Gaps = 5/465 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagga---aattaagaaagactgcagcactctgttgtttatgagaactgaaaac 60
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggaattcaggaaacaa--aagaaagactgcagcactctgttgtttatgagaactgaaaac 406
Query: 61 agatacttgagacaacaatatttacaaggatacaaattaagtacaacagagctgctgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agatacttgagacaacaatatttacaaggatacaaattaagtacaacagagctgctgcct 346
Query: 121 acagagatggaaattgggaataaatggaaacaaataaacaaggcaagaggaggcctcctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acagagatggaaattgggaataaatggaaacaaataaacaaggcaagaggaggcctcctg 286
Query: 181 tgataagacctttgcagaactggaaagtgggattaacttaaacctatgcattatttaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgataagacctttgcagaactggaaagtgggattaacttaaacctatgcattatttaaag 226
Query: 241 acaaacaaaaaaacaatgtcttgggctgaagagatggctcagcggttaagagcactgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acaaacaaaaaaacaatgtcttgggctgaagagatggctcagcggttaagagcactgact 166
Query: 301 gctcttccagaggtcctgagttcaaatctcagtaaccacatggtggctcacaaccatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gctcttccagaggtcctgagttcaaatctcagtaaccacatggtggctcacaaccatctg 106
Query: 361 taatgggatccgatgtcctcttctggtgtgtctgaagagagtaacagtgtactcatacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 taatgggatccgatgtcctcttctggtgtgtctgaagagagtaacagtgtactcatacac 46
Query: 421 ataaaataaataaatctttaaaaagaagtctttatttggcaacaa 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ataaaataaataaatctttaaaaagaagtctttatttggcaacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_m04.g1 MSMg01no453_m04.g1 CHROMAT_FILE:
MSMg01no453_m04.g1 PHD_FILE: MSMg01no453_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:44 2005
(526 letters)
>mm_chrX_20029167_20030092
Length = 926
Score = 977 bits (505), Expect = 0.0
Identities = 522/529 (98%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 1 caggccagcctggtctacaaagttggttccatgacagctagagctgttacacagagaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 caggccagcctggtctacaaagttggttccatgacagctagagctgttacacagagaaac 257
Query: 61 cctgtctcaaacaacaacaacaacaacaacaac---ccccgtccaaataaaaacaaaaag 117
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 258 cctgtctcaaacaacaacaacaacaacaacaacaacccccctccaaataaaaacaaaaag 317
Query: 118 gaaggaaagagatagagaatcaaattatcaataaatgtcgatagagagaggtggcttagc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaaggaaagagatagagaatcaaattatcaataaatgtcgatagagagaggtggcttagc 377
Query: 178 agtgttggaactactctactcccaacaaccatttggcttaaaactgtctgtaattccaac 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agttttggaactactctactcccaacaaccatttggcttaaaactgtctgtaattccaac 437
Query: 238 tccagaggatccaacacctttcctagccttgggcctgcacatgcgcacgtgcgcatacac 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 438 tccagaggatccaacacctttcctagccttgggcctgcacatgcgcacgttcgcatacac 497
Query: 298 acacatacacacatgtatgcatgcttattttctctgtcaccacacacacacaagatattt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acacatacacacatgtatgcatgcttattttctctgtcaccacacacacacaagatattt 557
Query: 358 ttaaaaaatgaccaagtttggaaaataggcatgattctccttgtctgatgtatcagtcac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttaaaaaatgaccaagtttggaaaataggcatgattctccttgtctgatgtatcagtcac 617
Query: 418 ctaatattccattcttcatgtaaaaattaagcatgtcaattgtatagtattagtatgtaa 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 618 ctaatattccattcttcatgtaaaaattaagcatgtcagttgtatagtattagtatgtaa 677
Query: 478 ttgtctgtattagtatgcagatttaaagatttcatgtattttatcttta 526
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgtctgtattagtatgcagatttaaagatttcatgtattttatcttta 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
