BAC Information

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BAC

Clone NameMSMg01-457I20
ChromosomeX (Build37)
Map Location 37,133,703 - 37,133,932
singlet/doubletsinglet
Overlap genenone
Upstream gene6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
Downstream geneEG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457I20.T7 (MSMg01no457_i20.b1)MSMg01-457I20.TJ (MSMg01no457_i20.g1)
ACCAG543592AG543593
length820772
length of high quality
(start - end)
239 (73 - 311)246 (82 - 327)
definitionCHROMAT_FILE: MSMg01no457_i20.b1 PHD_FILE: MSMg01no457_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:48 2005CHROMAT_FILE: MSMg01no457_i20.g1 PHD_FILE: MSMg01no457_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTATACTTGCAGCACAGATTGGTTTCTTGTTTTGTTTTGTTT
TGTTTTTGTCTGTCTCCAAAGTACTGGAATTAAAGCTGCCACCATGCCTA
GATTATCATAGTCATTGTCTTAGTCATCATTGTTGTCATTGTTGTTGTTG
TCATCACAGCCGTCCTCCTCCTCTGCCTCCTTCTCCTCCTCCTCCTCTTC
CTCCTCAACATCATCATAGTTTTTGTTGTTGTTGTTTGTTTTGTTTTTGA
GACAGGGNTTCTTTTTTTCTGTTTTTTTCTGGCTGTACTGGAAATCATTT
TGTAGACCATGCTCTCCCTCCCTTCCTTCCTTCCTTCCTTTCTTTCCTTT
CCTTCTTCTTTCTTTCCTTCCCTCCCTCCCTTCCTTTCTTTCTTTCCTTT
CCTTTTCCCCAACCTTTTTTCTTGTTTTCTTGGTTTAATTTTCATTCTTC
ACTCACTCATCTGGGTGGTATTTTTTTGAAACCTAATGCTTGTTCACGAT
TTCTCTATACTTTCTCGTTACCTTCATTTTTTGTGCTCTACATCATCTTT
CATATTTTCAAAAATCCTTCTCCTCTCTCTCCTCCCTTGTTATGCGCTAT
CAGCTCCTAACTCATCCTATTTTTCGTCTTTTCTATCTTCTTTTTCTCCT
CTCTCTTCATTTCACCTCTAATATTTCTATTCTCGCCATCTGCACTTCTC
TCTTCCCCTTTCCCTATTATTCTCTCCTTCTTTCCCATCTTTAAATTCTT
ATTTCCTCATTCTCCCTTAG
NNCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTATATTAAAGCATCCCT
GTGTCTCTGGAATGAAGCCTACTTGATCATGATGGATGATCCTTTTGATG
TGTTCTTGGATTCGGTTATCGAGAATTTCGGTTTTGCATCGATATCCATA
AGGCAAATTTGTTTGAATTTCTCTTTCTGTGTAGGGTCTTTATGTGGTTT
AGGTATCAGAGTATTTGTGATTTCATAGAATGAATTGGGTAGAATACCTT
TTGTTTCTTTTTTGTGGAATAATTTGAGTTTATTTTTAATTAGGNCTTCT
TTGAAGGTCTGATAGATTTGTGTACTAAACCCATCTGGTCCTGGGCTTTT
TTTGGTTGGTAGACTACTTATGACCGCCTTTTTTTCTTTATGGGATTATG
GTATTGCTTAGATCCTTTATCCTATTCTTCTTTATTTTAATACCTGGTAT
CTCCTTTTGTATATTTTTTTTTTTCTCCATGGTTTCATGTTTTTGTGCTT
TTATATCCTTTTGCAGCAGTTTTGACCCTTTTTTTGCTTTCTTTCCATTC
CCCTCTTTTCCCCTTTTTCCCTCCTTGTCTCTCCATTTCTTTTTTTCCCC
CTTCTTTTTTCTCCTTTTTTTTTTTTTTTTTTTTTTTATTTTCCTCTTTG
CCTTTCCCTTTTCCTTCTTTTTTTCTCACCTTCTTTCTTGCATTTTCTTT
TTACTCGCTTTTTTCACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_i20.b1 MSMg01no457_i20.b1 CHROMAT_FILE:
MSMg01no457_i20.b1 PHD_FILE: MSMg01no457_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:48 2005
         (239 letters)



>mm_chrX_37133564_37134202
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 229/235 (97%), Gaps = 5/235 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagattggtttcttgttttgttttgttttgtttttgtctgtctccaaagtactggaatta 60
           ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagattggtttc-----ttgttttgttttgtttttgtctgtctccaaagtactggaatta 315

                                                                       
Query: 61  aagctgccaccatgcctagattatcatagtcattgtcttagtcatcattgttgtcattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagctgccaccatgcctagattatcatagtcattgtcttagtcatcattgttgtcattgt 255

                                                                       
Query: 121 tgttgttgtcatcacagccgtcctcctcctctgcctccttctcctcctcctcctcttcct 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgttgttgtcatcgcagccgtcctcctcctctgcctccttctcctcctcctcctcttcct 195

                                                                  
Query: 181 cctcaacatcatcatagtttttgttgttgttgtttgttttgtttttgagacaggg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cctcaacatcatcatagtttttgttgttgttgtttgttttgtttttgagacaggg 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)