BAC Information

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BAC

Clone NameMSMg01-457M09
ChromosomeX (Build37)
Map Location 49,183,042 - 49,183,309
singlet/doubletsinglet
Overlap geneLOC100040479
Upstream gene2610018G03Rik, LOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2, Usp26
Downstream geneLOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M09.T7 (MSMg01no457_m09.b1)MSMg01-457M09.TJ (MSMg01no457_m09.g1)
ACCAG543760AG543761
length757759
length of high quality
(start - end)
273 (46 - 318)248 (79 - 326)
definitionCHROMAT_FILE: MSMg01no457_m09.b1 PHD_FILE: MSMg01no457_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:07 2005CHROMAT_FILE: MSMg01no457_m09.g1 PHD_FILE: MSMg01no457_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGTTCCTCCCGCTTCCGTCTCCTGGGTGCCAGGGTTCCAGGCAT
ATGCCACTGTGCTCTGTTTGTGACTTGCTAAGAAGAACTCACAGCTTCAT
GCGTACTAGAGAAGTAATCTACTAGTCAGTATTTGCACCCCACGCCCTGA
CTTTTACATTCAGTGTGCACGCGGCAGGGTGGGGGGAGTGTGGAGGAAAA
TCTCTCATGCCCAGGAGAACCAGAAGTTTTAAGTAATAAAAGAAATTCTA
GCCTAGTATGATGATTAATTAATANTGTAGTTGCAAGTGAACACTTTCAG
GCTTGACTGCCTAGATTCAAGTTTTGTTTTGATTTTTACTTTTAATGCAG
ACAAGTAGATTAGCAACCTGATAAAAAAATGAAATCAAAACCAAACATTT
TCAAGACCATAGATCCAGATATCAAGAATCATACTAAACGCCGGGCAGTG
GTGGCGCAAACCTTTAATCCCAGCACTTGGGAGGTATAGGCAGGCGGATT
TCTGAGTTCGAAGTCAGCCTGGTCTACTTTGTGAGTTTCCAGGACAGCTT
TGATTATTTTGTATAAACCTCTGTCGGATTATTCTTCTACCCATAAAATT
CTTTTTTTTTTTCTTTTTCTCCTTCTGCTTTTATTTCTTTGCTTTTCTTT
CTTATCTCTTCCTTTCCTTTTCTCTCTATACTTTTCTTCGATTACTTTTT
TTTCTTG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAGAAAGGCAATTAGCATA
AACAGACATACCATCAACTAGGAAATACAGATGGGTAACAAGGTTGTGAA
AGAGTGCTGAACATATTTAGCCACTAAGAGAAAAGCAAAACCACGCTGCG
ATCTGACTGCACACTTATCAAAAATGTCTGAGAGTTAAAAAGTGCCAACA
CCAAGTGTTTTCTAGTGTGAGGAGAGATGGATCACTCATAATACACAGAT
GCTGGGAATGTGAAATACTATGCTTNCTTTCTGGAAAACATCTGGGCAAT
ATGAAACTCAATGTGTAGTGGCATTTATCCTAGAGAAAGTAAAGCCAACA
GAGCCCCTAACATTTGAGGTTGTCACTACTAGGGCTGCCACAGTTTGCAT
CAAATTCTGTGCAGTAGATGAGAGTCTACTGATAGTTCCTGAAGTTTATG
CAGCCATGATAAGTGAGTTTGGGCCATGACCAGATCTGGAATAGGATAGT
CAGGATCACTAATGTGCACTATGTCACTTAAGTATTGCGATAGCTATGGT
TCTCTTTCTCAGAATCAAGGGCAGCTTCTGACATTTCCCCTGAAATCCTA
CTATTCCCTTCCTTTTTTTTTTTTTTTTGAACAGCCGGGGCGAAAAATTC
CTCCCTCCTCCTTATGCTTNTGTTGGTTAGAATTCTACCTCCTGTACCCC
CCTTTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m09.b1 MSMg01no457_m09.b1 CHROMAT_FILE:
MSMg01no457_m09.b1 PHD_FILE: MSMg01no457_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:07 2005
         (273 letters)



>mm_chrX_49182838_49183509
          Length = 672

 Score =  489 bits (253), Expect = e-143
 Identities = 265/269 (98%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgttcctcccgcttccgtctcctgggtgccagggttccaggcatatgccactg 64
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 472 gaattcctgttcctcctgcttccgtctcctgggtgccagggttccaggcatatgccaccg 413

                                                                       
Query: 65  tgctctgtttgtgacttgctaagaagaactcacagcttcatgcgtactagagaagtaatc 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 412 tgctctgtttgtgacttgctaagaagaactcacggcttcatgcgtactagagaagtaatc 353

                                                                       
Query: 125 tactagtcagtatttgcaccccacgccctgacttttacattcagtgtgcacgcggcaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tactagtcagtatttgcaccccacgccctgacttttacattcagtgtgcacgcggcaggg 293

                                                                       
Query: 185 tggggggagtgtggaggaaaatctctcatgcccaggagaaccagaagttttaagtaataa 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 292 tggggggagtgtggaggaaaatc-ctcatgcccaggagaaccagaagttttaagtaataa 234

                                        
Query: 245 aagaaattctagcctagtatgatgattaa 273
           |||||||||||||||||||||||||||||
Sbjct: 233 aagaaattctagcctagtatgatgattaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 672
Length adjustment: 9
Effective length of query: 264
Effective length of database: 663
Effective search space:   175032
Effective search space used:   175032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)