Query= MSMg01no458_f17.b1 MSMg01no458_f17.b1 CHROMAT_FILE:
MSMg01no458_f17.b1 PHD_FILE: MSMg01no458_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:55 2005
(501 letters)
>mm_chrX_54558614_54559514
Length = 901
Score = 810 bits (419), Expect = 0.0
Identities = 471/501 (94%), Gaps = 21/501 (4%)
Strand = Plus / Minus
Query: 1 tagttagacttgctatctagactaagcaggccttgaaggtttggtgatcctcctgattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tagttagacttgctatctagactaagcaggccttgaaggtttggtgatcctcctgattct 491
Query: 61 aattgctgagtgattactagtgtgagtcaccatgcttggctaatagctacattattgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aattgctgagtgattactagtgtgagtcaccatgcttggctaatagctacattattgacc 431
Query: 121 acctccgttcaattatgcctgtgcttgatatacgtgtcagagactgtaagaagcctcaac 180
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gcctcctttcaattgtgcctgtgcttgatatacgtgtcagagactgtaagaagcctcaac 371
Query: 181 atatcgtaatacgggaaatatattttaaaaccaacattttattttacattgaaaacaatg 240
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atatcgtaatatggggaatatattttaaaaccaacattttattttacattgaaaacaatg 311
Query: 241 gtgctggtgttttggctcagtgattaaaggcaccacttgcagccaagcctgacaaccaga 300
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 310 gtgctggtgaaatggctcagtgattaaagg---cacttgcagccaagcctggcaaccaga 254
Query: 301 gttaatgtccagagatgcatatggtatggtaggggagaactgattctcaaaacttgtcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gttaatgtccagagatgcatatggtatggtaggggagaactgattctcaaaacttgtcct 194
Query: 361 ctaacacacacacacacacacacacacacacacacacacacacacacacacacacagaga 420
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ctaacacacacacacacacacacacacacacacacacacacacacacac----------- 145
Query: 421 gagacagagacagagacacagaaagatagagaatatatcaataggtatttgacactttca 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 -------agacagagacacagaaagatagagaatatatcaataggtatttgacactttca 92
Query: 481 gtaaggagagtaacctatcag 501
|||||||||||||||||||||
Sbjct: 91 gtaaggagagtaacctatcag 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_f17.g1 MSMg01no458_f17.g1 CHROMAT_FILE:
MSMg01no458_f17.g1 PHD_FILE: MSMg01no458_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:56 2005
(334 letters)
>mm_chrX_54411535_54412268
Length = 734
Score = 630 bits (326), Expect = 0.0
Identities = 332/334 (99%)
Strand = Plus / Plus
Query: 1 ataatgatttaaggatctgtgctgtagcaagaactttcatttgttattttggatccaaca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ataatgatttaaggatctgtgctgtagcaagaactttgatttgttattttggatccaaca 260
Query: 61 ttttgccaccagcctcttacccctagggaaatgtaaaatctgaatgctcgtcaaaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgccaccagcctcttacccctagggaaatgtaaaatctgaatgctcgtcaaaatatt 320
Query: 121 acataactttcctaaaatggagtactataaaaccagagtttgaatgttttttaaaatgtc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcataactttcctaaaatggagtactataaaaccagagtttgaatgttttttaaaatgtc 380
Query: 181 acttgaattcttagcagtactatcacccacccctccacatacacacattgtgatttaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgaattcttagcagtactatcacccacccctccacatacacacattgtgatttaact 440
Query: 241 acaaattatcccacaaaggctcatgggttagcttcagctggtgacagtgtttgggaaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaattatcccacaaaggctcatgggttagcttcagctggtgacagtgtttgggaaggg 500
Query: 301 tgtggcagctttaggagcttcactgatggaggtg 334
||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggcagctttaggagcttcactgatggaggtg 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
