TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGATCAGCTGTGATGTTGCCACAAACCACCATTTTGTTCAAAGA
ACTAGAACTACAAATACTAGAAACACTGCCTGTAGATAAAAATAGATGGA
TATCCCAAACCTGAGTTTAATCTCATATGCTGACAGTGGCTTTAAAACAC
AAGTTCTAATAATAATTTAAAAATAGCCATAGCAATGGAGAAGTTAGTTT
GAGATGATATTTCTTGGAACTAGAAACTCAGTAACAGACAAGGGTGGATT
CAAAACCATAAAGAAAAGAAAGACACAGAAAAATAGGAAGGAAGTCTATT
GTTTCTGGCCAGGTATAAAGAAAGATGCTGAGAAGAGAGTAAAGAATGCA
GGGAAGGTTGTAGCCATCACCAAGCAAGACACTCAGACTCCCCTGGCACT
AAGTCTAAAGATCTGTTGTAAGGTTGGCATGGTTCCTATTTCCTATCTTT
CACCATACACACACACACACACACACACACACACACACATACACTCATTC
ACACACATCTGATAAAAGAAAAATAATAATGGGTCCAGCTGTAAAGTAGA
AGGAGACAGCATAAAAATACCAACATGGGATGATTAACCTTTATTGTGAA
AAAACCGCTTTTACCACTCCCTATTAACATATTCATGGGACATGGTTGCC
CGGGCCTTACTTTCGCCGCAGCACAATTCAAAATTTATTGTCATACCCAC
GTCTCTGAATTTC

TTTAGCTGCGCCGCTGTTCGCACTTTAGGACTATGAGTACGGTGATTTAT
GTGTCCTGAGAACTTCTAAAAATGTCCACAGTCTACAATCTGAGATGCTC
GATGACGAGTATAACGAAAAGGGCCGAGTGGATGTTTAGTANNNNNNNTT
TGGACTGAAAAAGTTAACGGTCCCAAGGAATCCCTTAAAACAATTCCGGT
TAAAAANNAACCCCCAAAACCCAAATAAAAACCCTAAAAAAAAAACGGGG
CCCCCCCCCCCTTTAAAAATTTCCCTATCAAAAAAACCCCCCTCCCAAAA
AATTTCTCTCTCTCCCCCCACCACAAATAAATACCGCCCCCCCCCNCCCA
AAAACACCCCCCCCACCCCCCCCCCNCCACCCCCCCCCCAACCCCCCCCC
CCCNCCCCCNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCNNNAC
CCNNCCCCNACCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCTTTCCCCT
CCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCTCCNNCCCCCTCCCCC
CCCCCCTCCCCTTTCTTCTTTTTTTGTTTT

Query= MSMg01no459_g20.b1 MSMg01no459_g20.b1 CHROMAT_FILE:
MSMg01no459_g20.b1 PHD_FILE: MSMg01no459_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:21 2005
         (495 letters)



>mm_chrX_40004676_40005570
          Length = 895

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%), Gaps = 2/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatg-atcagctgtgatgttgccacaaaccaccattttgttcaaagaactagaa 63
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaattctatgaat-agctgtgatgttgccacaaaccaccattttgttcaaagaactagaa 601

                                                                       
Query: 64  ctacaaatactagaaacactgcctgtagataaaaatagatggatatcccaaacctgagtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctacaaatactagaaacactgcctgtagataaaaatagatggatatcccaaacctgagtt 541

                                                                       
Query: 124 taatctcatatgctgacagtggctttaaaacacaagttctaataataatttaaaaatagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taatctcatatgctgacagtggctttaaaacacaagttctaataataatttaaaaatagc 481

                                                                       
Query: 184 catagcaatggagaagttagtttgagatgatatttcttggaactagaaactcagtaacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catagcaatggagaagttagtttgagatgatatttcttggaactagaaactcagtaacag 421

                                                                       
Query: 244 acaagggtggattcaaaaccataaagaaaagaaagacacagaaaaataggaaggaagtct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acaagggtggattcaaaaccataaagaaaagaaagacacagaaaaataggaaggaagtct 361

                                                                       
Query: 304 attgtttctggccaggtataaagaaagatgctgagaagagagtaaagaatgcagggaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 attgtttctggccaggtataaagaaagatgctgagaagagagtaaagaatgcagggaagg 301

                                                                       
Query: 364 ttgtagccatcaccaagcaagacactcagactcccctggcactaagtctaaagatctgtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttgtagccatcaccaagcaagacactcagactcccctggcactaagtctaaagatctgtt 241

                                                                       
Query: 424 gtaaggttggcatggttcctatttcctatctttcaccatacacacacacacacacacaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtaaggttggcatggttcctatttcctatctttcaccatacacacacacacacacacaca 181

                       
Query: 484 cacacacacaca 495
           ||||||||||||
Sbjct: 180 cacacacacaca 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)