BAC Information

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BAC

Clone NameMSMg01-459M15
ChromosomeX (Build37)
Map Location 57,210,113 - 57,210,517
singlet/doubletsinglet
Overlap genenone
Upstream geneFgf13
Downstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459M15.T7 (MSMg01no459_m15.b1)MSMg01-459M15.TJ (MSMg01no459_m15.g1)
ACCAG545299AG545300
length749824
length of high quality
(start - end)
412 (39 - 450)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no459_m15.b1 PHD_FILE: MSMg01no459_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:50 2005CHROMAT_FILE: MSMg01no459_m15.g1 PHD_FILE: MSMg01no459_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGAATT
CTTTGTTTCTTGCATTTATGTCACAGCAACTGATAACCACAGTGGCTAGC
TGATTTGTAGCTAGCTATCCCCTACAAATAGGACTCCTGAATCTATGGTG
CAGGAATGCAGCAATTAACTGCTTTTTAAGAGCCTGACATGCATATCCAG
TCAGGCTACTTGTATATTCCTATTGTTTATGTCAAAAATCTTGTAATCTA
ACTTGTATAGAGTGGTGACCTGTGTTTTCCCTTTTATCTCTATAGTCATT
TTATGCTACACTTTTTGTACTCTGTTCTCTCAGTGTATTTGTTCATCTGA
AGATTCTTGCAGAGGTCTTTGATCACCAGCACTGCATACTCTACCTGTAA
TTTATAAATAGTAAAATGCCTGCTTACCTTGTCTCAGCAAACGAAAGTAA
ATGTGGTTTCTTCTCAAATCATCTACTGATACAACCCACTTCTCCAAACC
ATAAGAATGAATACTCTAATCTCTCTGATTAAGCTCAGCTCCCTATAACC
TGAAGGAGTTTGAAATCACCTTCTTCCTCCCACCACTAACGGTGGACTGG
AAAAAATTTTGCACCGCCCAAAAATCGCCCCCTCCCCAAAATTATAAAAT
CTTTTACACTTTGGGATTTTACCCCCCCCCCCCGGCGCTGCCCCCACAAT
AATCTTCCTTTTTTTCCCCACATCCCCCCCTCCTTCTCCTCGTCCACGN
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGA
ATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGA
TTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATT
TTATTGAGGATTTTTGTTTTTATATTCATAAGAGAAATTGGTCTGAAGTT
CTCTATCTTTGTTGGATCTTTCTGTGGNTTAGGTATCAAACGAATATCGG
CTTTCTCCAACGACTTGGTAATAGGACCCTTCAATTTTTATTTTTTCCAC
ATACTTTGTTCTTTATTGTGAATTTAATCCTCTCTTTTTTATCCCTTAAT
AAATTCTCCCCCTTAACTTTCTTCTCCCTTTGGTTTTTTTTTTCCCCTTT
CTCATCCTTTCTTCCCTCCTCCTTTACTCTCCCCCCTTATATATATCCAC
CTTTCCCCTATCTTCTTTTTTTTCCCACTCTTTTTTCCCGCTCCCCCCCC
TTTTCTCTTTTTCTTTTTTTCTTATTCTCTTACTCTTCCCCTCCTCCTCC
CTCTTCACTCTTTCTCCCATTCTTTCCCCCCTCACTTTCATATTTCTCCT
TACTTATCCTTATCATCGCCTTATATCTTCTTTCTTTTTTTTTCTACACT
CTCTCCCTTTCTTTTCCGCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_m15.b1 MSMg01no459_m15.b1 CHROMAT_FILE:
MSMg01no459_m15.b1 PHD_FILE: MSMg01no459_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:50 2005
         (412 letters)



>mm_chrX_57209906_57210717
          Length = 812

 Score =  754 bits (390), Expect = 0.0
 Identities = 402/406 (99%), Gaps = 2/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctttg-tttcttgcatttatgtcacagcaactgataaccacagtggctagctgat 66
           |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctttgctctc-tgcatttatgtcacagcaactgataaccacagtggctagctgat 266

                                                                       
Query: 67  ttgtagctagctatcccctacaaataggactcctgaatctatggtgcaggaatgcagcaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgtagctagctatcccctacaaataggactcctgaatctatggtgcaggaatgcagcaa 326

                                                                       
Query: 127 ttaactgctttttaagagcctgacatgcatatccagtcaggctacttgtatattcctatt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttaactgctttttaagagcctgacatgcatatccagtcaggctacttgtatattcctatt 386

                                                                       
Query: 187 gtttatgtcaaaaatcttgtaatctaacttgtatagagtggtgacctgtgttttcccttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtttatgtcaaaaatcttgtaatctaacttgtatagagtggtgacctgtgttttcccttt 446

                                                                       
Query: 247 tatctctatagtcattttatgctacactttttgtactctgttctctcagtgtatttgttc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tatctctatagtcattttatgctacactttttgtactctgttctctcagtgtatttgttc 506

                                                                       
Query: 307 atctgaagattcttgcagaggtctttgatcaccagcactgcatactctacctgtaattta 366
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 507 atctgaagattcttgcagaggtctttgatcaccatcactgcatactctacctgtaattta 566

                                                         
Query: 367 taaatagtaaaatgcctgcttaccttgtctcagcaaacgaaagtaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taaatagtaaaatgcctgcttaccttgtctcagcaaacgaaagtaa 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)