BAC Information

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BAC

Clone NameMSMg01-461O07
ChromosomeX (Build37)
Map Location 121,308,356 - 121,308,592
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039751, LOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
Downstream geneLOC100039828, EG434843, EG665463, EG665522, LOC100038969, LOC100038978, EG665579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461O07.T7 (MSMg01no461_o07.b1)MSMg01-461O07.TJ (MSMg01no461_o07.g1)
ACCAG546908AG546909
length761733
length of high quality
(start - end)
317 (77 - 393)240 (74 - 313)
definitionCHROMAT_FILE: MSMg01no461_o07.b1 PHD_FILE: MSMg01no461_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:40 2005CHROMAT_FILE: MSMg01no461_o07.g1 PHD_FILE: MSMg01no461_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAGAATCCG
CGGAATTCTTACATTTTCTGTACCAAACAGAGCAATAAAAACATAATGAC
TGGCAGGGACTGAGCAATATAATACCTGAAATGAATTCTTCTCTAAAGTC
AGCTATATTCTTTGAAGCTAGGTTTGAACACTTTATGATCACACCATGCA
AATGGATTTCACACTCAAGCCATGGTTCTAATTAGGGAGTTTCTTTCTAG
CTAATCTTCTCATGAATAATTCAAAACTGTTGTTCCCCCTCAAACCACAG
CACAAGTTATTTCCTATTCTTCTGTAAATTCCTGTATATGAGAGGGATTG
TATGGGGGAATCTTTCTACTAACAACTAATGTAGCCTGCCATGCATAAGT
ATAACAAATATTCTAAACATACTTTCCTAAAGTTGTCCTGAGATTTCTAA
CTCTATGTAGCATATATTAATGGTTGTCTCAATCTCTCTTATACTACTAC
AGCTAACTCTGGTTGTTATTGCCCATTTCCTTATTGAATCCTCTGCCCTC
CACTTTGTTCACTATTACTCTTAAATCCCGTTTGATCGTTAGCTCATTAA
CATCCGTTTATTGTTCCATAATACATCCCCATATTCATTCCCTCGCAGTC
TTTTTTTCCTCTTTTAAAATCTTTGATATAATTCCTCCCATCCTTCTCAT
TCCTTCATTTCATTTTTATACCACACCATCTTTATCTTCTTCTTTTTTCC
CCCTTTCCCCT
TACGATGATAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAATTTAGACAAAGTGTACCTGATGA
CTCCTTGAGCCACTGAGAGTGATTTAAGCTCCACTTCAAGAATGGGGAAA
CAGTGTGAGTCTTTTTGGTGCTGAAGGGATAATTCTGAGGTTTGTGTGTC
AGAAACAGGACTTGGAGGACCCAGTGACAGAGTGATAATGTTGATGTATC
CACAAACAATCTATAAAGGATGCCATCCTTTAGAGGCATAAAGGTTCACA
CCATGTTGGGGAAAGTTTTTATGCCAAAGACTATTGTATCTGTACAAGAT
CAAGGGTCGATATGGAGAGGAGAGAAGGCCTGAATATTTCATGATTGAGA
CGTCCTGGGAACCTAGAACACGCAAATCATGCAGGCCATGCAACAGCTTA
ATCAATCTCCAGTGTGCTAGGAGACATTTCCCAGCTAGCTCTCCTGATAA
ATCTGCTGCCTACTTCTAAAAATGGCAAGGCTCTCTCATTTTTGCTGGTC
AGCTTAATGTCTATGCCCTGGGATCATTAACGTGCTGGCTTCTCTTACGC
TCTGAGACTTTATCAACCCGGGCCCTGATCTCTTGTAAAGGCGTTAATAT
GCTCCTACTATCTCATTATCCATCCCCTTGGCTGCTCCTTACATTATTTT
GACCGCTACCTCTTTTGGCCCTTCATTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_o07.g1 MSMg01no461_o07.g1 CHROMAT_FILE:
MSMg01no461_o07.g1 PHD_FILE: MSMg01no461_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:40 2005
         (240 letters)



>mm_chrX_121308153_121308792
          Length = 640

 Score =  352 bits (182), Expect = e-101
 Identities = 225/240 (93%), Gaps = 6/240 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   atttagacaaagtgtacctgatgactccttgagccactgagagtgatttaagctccactt 63
           |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 204 atttagacaaagtgtacctgatgactccttgagccattgagagagatttaagctccactt 263

                                                                       
Query: 64  caagaatgggga-aacagtgtgagtctt-tt-tggtgctgaagggataattctgaggttt 120
           |||| ||||||| || |||||||||||| || |  ||||||||| |||||||||||||||
Sbjct: 264 caagcatggggagaa-agtgtgagtcttcttat--tgctgaaggaataattctgaggttt 320

                                                                       
Query: 121 gtgtgtcagaaacaggacttggaggacccagtgacagagtgataatgttgatgtatccac 180
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ctgtgtcagaaacaggacttggaggacccattgacagagtgataatgttgatgtatccac 380

                                                                       
Query: 181 aaacaatctataaaggatgccatcctttagaggcataaaggttcacaccatgttggggaa 240
           ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 381 aaacaatctataaagaatgccatcctttagaggcagaaagattcacaccatgttggggaa 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)