BAC Information

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BAC

Clone NameMSMg01-462B12
ChromosomeX (Build37)
Map Location 53,260,061 - 53,260,608
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187
Downstream geneLOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462B12.T7 (MSMg01no462_b12.b1)MSMg01-462B12.TJ (MSMg01no462_b12.g1)
ACCAG547062AG547063
length7762,349
length of high quality
(start - end)
543 (47 - 589)---
definitionCHROMAT_FILE: MSMg01no462_b12.b1 PHD_FILE: MSMg01no462_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:57 2005CHROMAT_FILE: MSMg01no462_b12.g1 PHD_FILE: MSMg01no462_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGAGTAGATCACTTCTAAAGCTGAAATAATCTGCAGGTTATCT
CAGTGATAGTGGGGACTCTGAGGGACAGGCAGATGTGGAGGCAGAGGGGG
AGCCAGAGTGAGGACCTCGAATTCCAAGCCATACTAAGCTGTATAATTGA
GCCTTTGTCTCCATAACAACTAAAAGCTTCATGACTTCAGGGCATCTGAT
TATTCCCTGTACCACTATTTACAAAGTCTTTGTTACAAATTCATAGTTTT
TACAACCAAAATTTTCAGGGAATGAGAGGATTAGGATTTCAAATTATTAT
TTCCTATTATTCTTTAACATTTTTTGCTTAAACTAGCAAAATATATGTAT
TCATTTTAAAAATTTTCAATTTATTATTATTATTATTATTATTATTATTA
TTATTAAAAATCAGTTTTACAGTCCAGTTCTTGTGTTCCTCTTGATTAAA
TTTGGTTACACTAGCCTCTAATTTTCTCTCATTAATCAAATAGCTTAAAA
CTTCTTTTGTTTTTATGGAGTGAATATAATTTATGATAGTTAAAAGCCTG
TTAAATATACATGATATCTTCTAAAACTAAAATTCATATACATTCCACCA
GNTTTTAAAACCTATTTTGGAATATTAACCCTGATAGAAGCTTCCCCAAA
TAACTCCTAACATAGCCCTCCATGAAAGGAAAAAAGGGACCGGTTCCCCT
TAAGGAGGTTACCACTCCTCCCCCCG
TTCCTTTCTCCTNCCTACTCTCTANNTCTATCACGTTNCATCCTAANATN
CCCNACTCCAGCATGANCGAGNCGACATNAGACATCACATACGGNCGGGC
GCGACGATGATATGGGCACNCGAGACACAGTACAGACGCAGAGCNTGGTA
TACACACTGCACTGTGCGCAGCATAGTCAGAGCGTNAGCAGNGCTCGCAG
NCGAGGAAATGCGTCTTCTAGTATCCCGGCTTCTACANCTGTATCATAAT
CCTATATTTCGCTCTCTCGACGCTGCTNACGCTGCTACTGATTATCCTAT
CCTGCACTACTGTANATTTGATGTNACGTGCGTCTCGCCGTACCCCCCTA
CCTGACTANCAGTCAGTCACGCTCTGAGTCGNGTCTCACAGTNGTTCACT
AGNTGTCAGTGCATCGCTAGCTGCGACTCTCATCATCGATTCGACCTCTG
ACGCGTAGTCCATGCGATGCACATGTGTCTATCACTGCATACTTACTGTG
TNTNTATATACGACATATACTAATGAGCGCACTANAGTAGCAGCTCGTGA
CAGCTATCGTCAATGATGCTCGCGCTGCTCGTGCATTGATGTTGGCGACN
CGACTGCATGTCCTATCACACGCGCATCGTTGNGCGCAGTGACGCNTGTA
TCGATGACCGAGCACTACGAGTATGATCGACATACAGGACGATGATGCGA
CGTAGCCGAATCACGCAACAGAGGCATGATTCANTAGCNGCAGNGATATG
CAGCGANAGATCACCAGCAGCAGTGATATACATACATGTCGACTAGTATG
CACGTCGCTTGCGCGCGATAGCTGCGGACGCNACGCATCGACACTACNGA
TCACCCATGCTACTGTCTNACCACATACACGCAGACATCGATGAGCACCG
TATCACTATATCATACCAGANGCATCGTATGGTGTGCGTGATAGNATAGA
CGCACGTAGCACGTACAGTAACATCGTCAGCGTCTGNTATATACTCTACG
TGTGCTGCATATAGACATTATCTANGNCACATGTCGTAGACGTCAGNAGA
CGATGNTAGTTGNATGNTGCNTGTGATACGTCTATCCATACGGTCATACN
TGGCGTACGACTGTGAGACTAGGAGCGAGTTCGATCCGCAGNCAGCTANC
CCAGCATANTAGCGTCGGACATCGGNTGTCCGGNCGAGTCATACGTCGAA
GCTCTGCTGACTGATGTACGGTGATATCGCAGTCAGCGCGCTTCGTCTCG
CATGATGCCAGGACATGCGTTTNATGTACGACACAGCTCNGTCATCGTAC
GACGTANCAACTTAATGCGTCNTNCGTNTGCTTAGNATGCTAGGAGACGC
NGTAGATGCTGCNGACGCAGCGCAGCTATNCGTATAGTGACACNAGACTA
CTACTGCGTCACTGTCATGANCACGTACGTACTGACGTCACGTNGATANA
CGTCGACGCTTCGTNCGTCNACTGAANCTCANGCAGTCGCNGCCTACATC
NACTGACTGTTGTGTACCGTANTATNCGTCTGCTGATCACNGTGNCANTA
TGATNCNGCGAGANTCATGATTAGNTACATACACACNGCCCTCTACGTAC
TANGTTCATNCTNCGTGNTCNGTCGATGNNCGTAACGCGNAGCGAGNACT
GCGTGATCGNGTNCGCGCGACGNTAGCAACACGATCATGTANTANTACAT
NACATCGTCATGATTATACGCTACTCACAGNTGTCAATGATNCACTGTGA
TGACCTGATCNNCCCGATTATCCCGATCGTACGCCGACANATNATCAATG
ATAATGTNCGCTCGTACGCATGCAATNGCCAANGANGGCATCAGCTGNTG
CACTGCACATGCNAGTNANTNATNCGTGTAGCTANAGCGACGTGACCCAC
TGAGTAGACGAATGACATATCGACTGATATACNTATCGCNCNAANTANTA
AACTGCCCATGCAGCNGCCCAATTGCGTTATTTNATCGCTGGAAATTANG
TATGAACGTNANNAGTACTTNCGTGACGACTACACGAACTACTGACTTCG
CGACATCGATTATCATGTACCCAGCATCTGANCTTACTTGACCGACTTGG
CCGTCTGNGATACTANCAGTCATACGGGTCTGCAGNAGGATCGNCAACGA
CGACGATGCTCTAANTAGTCATGGTGCTTGNCGCGACTNCACTAGNTCGT
NGTTTGATNTGCACGATCTACATCGTCGATGCANACNTNCGCTGAGNATC
ATCAGTCGTGATGCGCCNGTGCAGTAGTTGANCGTACATNCGNTGATCAT
AAGNCGACATGACCGTCATGCTGCTGATGTAGTTAGCCTCNTCGGCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_b12.b1 MSMg01no462_b12.b1 CHROMAT_FILE:
MSMg01no462_b12.b1 PHD_FILE: MSMg01no462_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:57 2005
         (543 letters)



>mm_chrX_53260035_53260977
          Length = 943

 Score =  967 bits (500), Expect = 0.0
 Identities = 532/548 (97%), Gaps = 9/548 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgagtagatcacttctaaagctgaaataatctgcaggttatctcagtgatagt 64
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 574 gaattcttgagtagatcagttctaaagctgaactaatctgcaggttatctcagtgatagt 515

                                                                       
Query: 65  ggggactctgagggacaggcagatgtggaggcagagggggagccagagtgaggacctcga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggggactctgagggacaggcagatgtggaggcagagggggagccagagtgaggacctcga 455

                                                                       
Query: 125 attccaagccatactaagctgtataattgagcctttgtctccataacaactaaaagcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 attccaagccatactaagctgtataattgagcctttgtctccataacaactaaaagcttc 395

                                                                       
Query: 185 atgacttcagggcatctgattattccctgtaccactatttacaaagtctttgttacaaat 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atgacttcagggcatctgactattccctgtaccactatttacaaagtctttgttacaaat 335

                                                                       
Query: 245 tcatagtttttacaaccaaaattttcagggaatgagaggattaggatttcaaattattat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcatagtttttacaaccaaaattttcagggaatgagaggattaggatttcaaattattat 275

                                                                       
Query: 305 ttcctattattctttaacattttttgcttaaactagcaaaatatatgtattcattttaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 ttcctattattctttaacattttttgcttaaactagcaaaatatatgtattcatttttaa 215

                                                                       
Query: 365 aattttcaat---------ttattattattattattattattattattattattaaaaat 415
           | ||||||||         |||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atttttcaatttattattattattattattattattattattattattattattaaaaat 155

                                                                       
Query: 416 cagttttacagtccagttcttgtgttcctcttgattaaatttggttacactagcctctaa 475
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 154 cagttttacagtccagttcttgtgttcctcttggttaaatttggttacactagcctctaa 95

                                                                       
Query: 476 ttttctctcattaatcaaatagcttaaaacttcttttgtttttatggagtgaatataatt 535
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 94  ttttctctcattaatcaaatagcttataacttcttttgtttttatggagtgaatataatt 35

                   
Query: 536 tatgatag 543
           ||||||||
Sbjct: 34  tatgatag 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)