BAC Information

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BAC

Clone NameMSMg01-466K24
ChromosomeX (Build37)
Map Location 123,350,190 - 123,350,644
singlet/doubletsinglet
Overlap gene4932411N23Rik
Upstream geneEG665611, EG626048, LOC100040410, LOC100039903, LOC665679
Downstream geneGm381, LOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466K24.T7 (MSMg01no466_k24.b1)MSMg01-466K24.TJ (MSMg01no466_k24.g1)
ACCAG550575AG550576
length758753
length of high quality
(start - end)		455 (77 - 531)423 (80 - 502)
definitionCHROMAT_FILE: MSMg01no466_k24.b1 PHD_FILE: MSMg01no466_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:16 2005CHROMAT_FILE: MSMg01no466_k24.g1 PHD_FILE: MSMg01no466_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATC
CGCGGAATTCTGAAATTTTTCTCTCTTCAGCAAATGATTTACCTTTTTAT
GGAAGTAACAATATGTGGAAATGTCATAGTATCTAAACTTGTCCTGTATT
CTGAACATTGATATAGAGGGATTCCTTTTAATTACTCTTTAAAGCCATGT
AAATAATGATATTCCAGTTTCTGACCATTTCAATTTTGGCATTTGTTTGC
TGGAAGTACTGCAATAGAAATATAAAATCTTCTTGATATTCAATTAATGG
ATAATTAACAATTTTATTTTTCAGAACTGTTATGCATATTGACATAAATC
AACAGTTCTCTGAAGCTTCCATGCTTAATGATTTTGGACCTCTTGGTCTA
GACCTGTGCACTCTAATTTATCATCAATGAGAAATTTCCAACTACACCAG
AAGAAAACATAAAGTGAAACATATCAACCATCTTTAAGGGCAGCAGTTCG
TACCAGCTTGTCACATGTACCAACTCTAGTTAAACTTTAATTCATCAGTA
TCAAAGAGAAAATTGTTGCAGATAACATCCTTTTATGTTATCCAGTTTAA
GAGAAACTGACTTGATTTTATGGGAAACACTGGAGCTAATCCTACCCGGT
ACTATATTTATAGTTGAGGATATTTGATAAAGTTTTCTGTTCTTTAACAG
ATCAAATTATAACTCTCTTTTTTCTTTTTGTGAACTCCAACCGAACCTTT
TTTTTTTN

NTTTTTTCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGAAAAACCTTCAGTTAG
AAAGGAAAACAAAGAACACCTATTTTTCCTAATAGAGAAAATGGAGAGAA
TCATTTTCTGATAAAATTCGAGATGTTCTTAAACAGCATTTGGATAAAAA
GAAAAAAATTACAATAAACGAAGAAAAATGGAAGAATTTGATAGAAAAAA
AACCTGGTCAAATGGAAAACAGGGAAAACTCATGTTCACAAGTTTTGCAA
AGAAGAGATCAATATTTTAATATAAACATACAAGATTGAATTGAATTTAT
TATGAGAAAGTTGACCAAATTAATACAAAAATGTGTTAAAATGGAAGAAT
TCAATGAAAAAAAAAAAGGACTGGTAGAAAGGCAAACATAGAAAACCTGT
TTTTCCTATTAGAAAAATCGGATAGAAACATTTTCTGATAAAATTTGAGA
TGTTCTTATACAGCATAATTGGGAAAAATGCAAAAATTATTACAAAATAT
GGATAAGTTGTAAAAAATTGATGGAAAAAGGCTTGTATTATTGAAGACGT
AAAAAAAAAATGTTCCCTAATTTGAGAAAGAGAAATCTTCTTTGCCAGGT
TAAATAGAAGATTTTTTTAGAAAGTTTTTGTGGGAAAATTGAAAAAAAAA
TAAAAAAATGGTTTTAAAGGGGGAATCCTTTGGTGAAACCCCTTGGGAAA
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_k24.b1 MSMg01no466_k24.b1 CHROMAT_FILE:
MSMg01no466_k24.b1 PHD_FILE: MSMg01no466_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:16 2005
         (455 letters)



>mm_chrX_123349990_123350844
          Length = 855

 Score =  872 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcaaatgatttacctttttatggaagtaacaatatgtggaaatgtcatagtatctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tcagcaaatgatttacctttttatggaagtaacaatatgtggaaatgtcatagtatctaa 596

                                                                       
Query: 61  acttgtcctgtattctgaacattgatatagagggattccttttaattactctttaaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acttgtcctgtattctgaacattgatatagagggattccttttaattactctttaaagcc 536

                                                                       
Query: 121 atgtaaataatgatattccagtttctgaccatttcaattttggcatttgtttgctggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atgtaaataatgatattccagtttctgaccatttcaattttggcatttgtttgctggaag 476

                                                                       
Query: 181 tactgcaatagaaatataaaatcttcttgatattcaattaatggataattaacaatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tactgcaatagaaatataaaatcttcttgatattcaattaatggataattaacaatttta 416

                                                                       
Query: 241 tttttcagaactgttatgcatattgacataaatcaacagttctctgaagcttccatgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tttttcagaactgttatgcatattgacataaatcaacagttctctgaagcttccatgctt 356

                                                                       
Query: 301 aatgattttggacctcttggtctagacctgtgcactctaatttatcatcaatgagaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatgattttggacctcttggtctagacctgtgcactctaatttatcatcaatgagaaatt 296

                                                                       
Query: 361 tccaactacaccagaagaaaacataaagtgaaacatatcaaccatctttaagggcagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tccaactacaccagaagaaaacataaagtgaaacatatcaaccatctttaagggcagcag 236

                                              
Query: 421 ttcgtaccagcttgtcacatgtaccaactctagtt 455
           |||||| ||||||||||||||||||||||||||||
Sbjct: 235 ttcgtagcagcttgtcacatgtaccaactctagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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