BAC Information

Click to search

BAC

Clone NameMSMg01-467L16
ChromosomeX (Build37)
Map Location 35,351,395 - 35,351,639
singlet/doubletsinglet
Overlap genenone
Upstream geneC330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620
Downstream gene4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L16.T7 (MSMg01no467_l16.b1)MSMg01-467L16.TJ (MSMg01no467_l16.g1)
ACCAG551368AG551369
length746733
length of high quality
(start - end)
245 (66 - 310)404 (71 - 474)
definitionCHROMAT_FILE: MSMg01no467_l16.b1 PHD_FILE: MSMg01no467_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:41 2005CHROMAT_FILE: MSMg01no467_l16.g1 PHD_FILE: MSMg01no467_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCTAGTTCACTGATTGGCTACTGCAAGTCAAGGTTCTCCATACTAAGCA
GGTGTGTATGTGTGAGTGTTGCCATTTCAGCCTAGCAGTGTGTAGATTCT
GGGGAAGATCAGGTCTTGATCACTTACCAGAGTCTTCTAAGAGCCCAGGC
TGCCTGACTCCAACTAGATCTTGACTTGTGGTGATAACACAGAAAGTCAA
GTGTCTGGGCCTATCCCTCATCAAGCCTGGCTCTTCAGCCATCTGCCTGT
CCTTAACTAGGTTTATTAAGTCTGAGGATGTCACTGGAGGAGTTGTTTTG
ATTTCTCCCCAGGCTTGGCTTTTGCTCAGGGTATATGACACAAGATGGGC
CTGTGAGTATAATGAAAGTGGTTGGGATACTGGGCTCTGATTACACTGGT
TTAATGTTCAGGGTGCGTAATCTTGATAGTGGCTTGGGAGTGTGGAGAAG
GTGGAGGCACCTGATTTTTCATGCTTTCCCCAGGCTGTGTTGTTGTTCCT
CTTGTCTTACTCTTTTTTTTGTTCCTTGCGCCTGTTTTTCACCTTTTCGA
TGTCCCCCTTTCTTCTTTGCCCTTCCCTATGTTCCCGTTCTTTCTTTTTT
ACATTGCCCCTCTTCAGTTCTGTCCCCCTATTTTTCGTATCTTTATATCT
CTTCTTTTTTTCCCCTTTATTTTTGTTTTTTTCCTCCCCTCCTCTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTACTCCATTTCAAAAT
TGGGTTATTTGGATTGTGGGTGCCTAATTTCTTGAGTTCTTTATAAATTT
TGGATCTGTCAGATGTAGGGTTGGTAAAGATCCTTTCCCAATCTGTAGGC
TGCCATTTTGTCCTACTGAGTGTCTTTTGCCTTACAGAAGCTTTTTCAGT
TTCATGAGGTCCCATTTATCAATTGTTGATCTTAGAGCCTGAGCCATTGG
TGTTCTGTTCATATTATTGTCTCCTCTACCAGTGAGTTCAAGGCTATTCC
CCACTTTCTGTTCTATTAGATTAAGTGTATTTGGCTTTATGTTGAGGTCC
TTGATCCATTTGGAAGTAAGTTTTGTGCAAGGTGTTAAAAATGGATCTAT
TTGCATTCTCTACAATCAGACATACAGTTAGACCAGCACCATGTGTTGAA
GCTTTATTTTTTCCATTGTATGATTTTGGCTTCTTTTGTCACAACCAGTT
GTCCCCAGTGTGGTAATTTGCTTCCGGCTTATCGATTTAATCCATTGGAT
CACCTGCTCGCTCCCTTATCGAATCCATGGTTTTTTTTTGTTATCTTCTC
GGAAATACGCCCCGTTTCTCCCCCTTCCTCTTTTGCTTTCGCAAATCCGT
CCCACACCCTTTATCCTCCTCCAATCCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l16.b1 MSMg01no467_l16.b1 CHROMAT_FILE:
MSMg01no467_l16.b1 PHD_FILE: MSMg01no467_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:41 2005
         (245 letters)



>mm_chrX_35351195_35351839
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctactgcaagtcaaggttctccatactaagcaggtgtgtatgtgtgagtgttgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggctactgcaagtcaaggttctccatactaagcaggtgtgtatgtgtgagtgttgccat 260

                                                                       
Query: 61  ttcagcctagcagtgtgtagattctggggaagatcaggtcttgatcacttaccagagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagcctagcagtgtgtagattctggggaagatcaggtcttgatcacttaccagagtct 320

                                                                       
Query: 121 tctaagagcccaggctgcctgactccaactagatcttgacttgtggtgataacacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaagagcccaggctgcctgactccaactagatcttgacttgtggtgataacacagaaa 380

                                                                       
Query: 181 gtcaagtgtctgggcctatccctcatcaagcctggctcttcagccatctgcctgtcctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaagtgtctgggcctatccctcatcaagcctggctcttcagccatctgcctgtcctta 440

                
Query: 241 actag 245
           |||||
Sbjct: 441 actag 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)