BAC Information

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BAC

Clone NameMSMg01-470J21
ChromosomeX (Build37)
Map Location 39,506,413 - 39,506,558
singlet/doubletsinglet
Overlap geneStag2
Upstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4
Downstream geneLOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470J21.T7 (MSMg01no470_j21.b1)MSMg01-470J21.TJ (MSMg01no470_j21.g1)
ACCAG553578AG553579
length761778
length of high quality
(start - end)
146 (172 - 317)433 (71 - 503)
definitionCHROMAT_FILE: MSMg01no470_j21.b1 PHD_FILE: MSMg01no470_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:35 2005CHROMAT_FILE: MSMg01no470_j21.g1 PHD_FILE: MSMg01no470_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCCGCTAAACGAANACTACTTTCCAAACACGGCGCNAATCA
GNCATGTTAACATACCACCTGGAATGTTCCCCGNGGCACCCCAATCCCTT
CACTGTCACTTACTCGGCTGCCAAAGCCCCTCCTATTAATAGTAAATCCC
TCTCCTACTGACTCGGAGGAGCTCCAACTTAATGAAACACACACCAAGAA
CAAGTTGTTAAATAGACAAATGGAATTTCCTATTTAAAAAAAAAATCTTA
TAGAAAGCAGAAGCCCAGCACGTTCAGACTGTTCCATTTTAAGTCTTATC
TGTAAGAATTTATGTTGTTTCCTTCTGCAGGGCTTGTTCAAATATTTTCG
AAACTTGTTATGCTAGGCATTATGTAATTTCCTACACACAAGCCTAAGTT
TCCGTGTAAATAACTTAAGTAAATATAAAGAAGTCAACACACCAAAATGT
AAAGACTTTGAAATCTCTCTTCCAAATTCTTTTTCCTCAACTACAGAAAT
TGCCAAGCAAACAGCACACTACAATAAGTTACCAATGAGCCCTTCTGAAC
TCATCCAGCCACAATAATCAACTGGCGGCCACCACTCCTTTCATCTCTGG
CCCCCTACTCTCCCTATCCTGAAAGAGAATGGAGGGCCACGTACTCCCTA
ACGACTCTGATGATAACCTCCAACGCACCACAACACCCAAAATCACATTG
CCTACAAGCTCCAAAATCTCAACGTCGTTACTGTTAAAACCCTCTCCGCC
CAACTTCTTAA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTA
TTGAGGATTTTTGCATCTATATTCTTAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGTATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTT
CATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGT
TTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGCAGACTATTTATCA
CTGCTTCTATTTCTTTAGGGGATATGCGACTGTTTATAAGGTCCCTTTGA
TCCCGACTCCCCTTTGGTTCCTGGTATCTGTTTATATTTTTGTCCCTTTC
CCCCAGTTTTTTTTCTTTTTTCGTTGAATATACTCCTTTTCCATATCGTC
ACTCGGCTGGCGTCTTTTCCATCTTTCTTCGCCTTTTCGCTCGCCTAGCC
TCACCCCTTATTCCTTCTCCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_j21.b1 MSMg01no470_j21.b1 CHROMAT_FILE:
MSMg01no470_j21.b1 PHD_FILE: MSMg01no470_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:35 2005
         (146 letters)



>mm_chrX_39506213_39506758
          Length = 546

 Score =  259 bits (134), Expect = 5e-74
 Identities = 143/146 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccaacttaatgaaacacacaccaagaacaagttgttaaatagacaaatggaatttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctccaacttaatgaaacacacaccaagaacaagttgttaaatagacaaatggaatttcct 287

                                                                       
Query: 61  atttaaaaaaaaaatcttatagaaagcagaagcccagcacgttcagactgttccatttta 120
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atttaaaaaaaaaatcaaagagaaagcagaagcccagcacgttcagactgttccatttta 227

                                     
Query: 121 agtcttatctgtaagaatttatgttg 146
           ||||||||||||||||||||||||||
Sbjct: 226 agtcttatctgtaagaatttatgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)