BAC Information

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BAC

Clone NameMSMg01-471N13
ChromosomeX (Build37)
Map Location 95,834,644 - 95,834,995
singlet/doubletsinglet
Overlap geneOphn1
Upstream geneLOC668244, Ar, LOC100042324
Downstream geneYipf6, LOC100042932, Stard8, LOC436219, Efnb1, Pja1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471N13.T7 (MSMg01no471_n13.b1)MSMg01-471N13.TJ (MSMg01no471_n13.g1)
ACCAG554518AG554519
length752761
length of high quality
(start - end)		706 (47 - 752)644 (78 - 721)
definitionCHROMAT_FILE: MSMg01no471_n13.b1 PHD_FILE: MSMg01no471_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:15 2005CHROMAT_FILE: MSMg01no471_n13.g1 PHD_FILE: MSMg01no471_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGGCTTCCCCAGCACCATGCCTGCCTGGATGTTGCCATGCTTC
TCACCTTGATGATAATGGACAGAACCTCTGAATCTGTAAGCCATCCCCAA
TTAAATGTTGTCCCAACATTGGTGATGGTGTCTTTTTACACCATTGAAAC
TCTAAGACAGAAGTTGGTACCAGGGACTAAGGTATTGCTATGATAGGCTT
GACCATACTTTTGTTTTGAAGAATGTGGATTTGGGGACTTTGGATTTTGA
AAGTGGTAGAATGCTTTATTTGGGGCTTAATGGGTCATCCTAGTAAGAAT
ATGGAAGACTTTGTTGTTGAAGGTGATTTGAACTATGGAAACCTGGTTAT
AGAAGTTTCAGAAGAGAAGAATTTTAGTATGTGGTGGAAAGACTGTTAGT
GTGATATTTTTGGTGAAGAATGTGGCTGCTTTTTGCTCTTTTCTGTAGAG
TCTGCCTGAGGCTAAGGTGAAGAGTCAAATTAATTGCCAATCTAGACTGT
GCTGTGGTTTAGTCTCATGAAGAGCATTTTGATGAAGTGTAGCAAGCTTA
ATATGTCCAGACAAAGCTTAACAGATATTTATAACAGGACTGTCCGTAGT
TATTCAAAGCTGTAAATAAACCAGTCACCCATCACCATATAAATGCATAG
AGAAAATACTGCATACTATAAGGAGTCACTGGTATTGGATGTAGTGTTCC
TT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTCGA
AATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATA
AGTGGATATTAGCTCCAAACCTAGGATACCCAAGATATAAGATATAATTT
GCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTAT
GCCCCTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_n13.b1 MSMg01no471_n13.b1 CHROMAT_FILE:
MSMg01no471_n13.b1 PHD_FILE: MSMg01no471_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:15 2005
         (706 letters)



>mm_chrX_95833890_95834995
          Length = 1106

 Score =  673 bits (348), Expect = 0.0
 Identities = 351/352 (99%)
 Strand = Plus / Minus

                                                                        
Query: 355  agaagtttcagaagagaagaattttagtatgtggtggaaagactgttagtgtgatatttt 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 agaagtttcagaagagaagaattttagtatgtggtggaaagactgttagtgtgatatttt 1047

                                                                        
Query: 415  tggtgaagaatgtggctgctttttgctcttttctgtagagtctgcctgaggctaaggtga 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tggtgaagaatgtggctgctttttgctcttttctgtagagtctgcctgaggctaaggtga 987

                                                                        
Query: 475  agagtcaaattaattgccaatctagactgtgctgtggtttagtctcatgaagagcatttt 534
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 986  agagtcaaattaattgccaatctagactgtgctgtggtttagtttcatgaagagcatttt 927

                                                                        
Query: 535  gatgaagtgtagcaagcttaatatgtccagacaaagcttaacagatatttataacaggac 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  gatgaagtgtagcaagcttaatatgtccagacaaagcttaacagatatttataacaggac 867

                                                                        
Query: 595  tgtccgtagttattcaaagctgtaaataaaccagtcacccatcaccatataaatgcatag 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  tgtccgtagttattcaaagctgtaaataaaccagtcacccatcaccatataaatgcatag 807

                                                                
Query: 655  agaaaatactgcatactataaggagtcactggtattggatgtagtgttcctt 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  agaaaatactgcatactataaggagtcactggtattggatgtagtgttcctt 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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