BAC Information

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BAC

Clone NameMSMg01-473L08
ChromosomeX (Build37)
Map Location 8,479,597 - 8,479,847
singlet/doubletsinglet
Overlap genenone
Upstream geneTimm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1, Glod5, LOC668975, EG627737, EG632013, Suv39h1, Was, EG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik
Downstream geneLOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3, 1700054O13Rik, 4930557A04Rik, Sytl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473L08.T7 (MSMg01no473_l08.b1)MSMg01-473L08.TJ (MSMg01no473_l08.g1)
ACCAG555944AG555945
length775774
length of high quality
(start - end)
253 (76 - 328)500 (75 - 574)
definitionCHROMAT_FILE: MSMg01no473_l08.b1 PHD_FILE: MSMg01no473_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:54 2005CHROMAT_FILE: MSMg01no473_l08.g1 PHD_FILE: MSMg01no473_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTAAACCCGCG
GAATTCTGGACAAGGATACCATGAACCTCTCCCCCAAGTTGGGTTTCTAA
GTGTCTGGCGACTGTTGGGCCAGGAGGAGAGACAGTGATCAGGTCTGTGG
TGGTAGCCCCAGGCCATCTATGAGTGGAGGCCTAGGTTTGGTGACTAGTA
GAGACCTCCTCCATCTTTGCCCTTTGTCTGTGCCCACAGATGATCAGTGG
TCCCTGCCCTTTCTAAACACAGTCTGCAGTCTCTGTCTCCCTGTCCTCTG
TAAGCAAATGGACTGAGGAAGTTTTGTTTTCTCGTTCAAGGCAGCCTCAG
AGCCTGGCTCTCACATAGTATTTTTGCTTGAGGTCTGTCATTTGTGTGTT
TTAAACTGACCACCTAGACTGAATATGCAGGTTATCTGGGATTTTCATGG
TGCTCCCTGCCCCTAGCTTCTTGGAGGTTTTGTTAGGGTTTCTGTTGCTG
TGAACAGACACCATGATCAAGGCAACTCTTATAAAGGACAACATTTAATT
GGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTACCATCAAGGTATGT
ACTTGGCATTATCCAGGCACGTATGTTGCATGATGATTTGATAGATCTAC
ATCTTCCTCTGAAGGCTACCTCTTTTTTTTTTTGTTTTTCATTCTCCTTG
GTTCATGGTCTTCTATCCCTTCTTTCTTGGTAAAATCTTCCTCTTCTATT
GTTCTCTTTTTTTTTTTATTTTGCC
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTATCTATTCAGTAACA
TTCAAATTTACTTCTAGTACAGACAATGAAACTAATTAGGCATTACAAAG
AACAGAGCTGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTGGGAC
AATAACCAGTCTTACCCAGACAAGAGAATTCACAATGGCCTATGGAATAG
GTGGGTTTACCATGAATGAGTTAGGGACTTTCAGGGAAGAAACCCTGAGA
CAGGTTTCTTCACTAGGCCCAAAGATTTTGTTAATCAGGCATTTACTAGA
ACCCTTGGTGGTGGGCTTAACAAAAGACCTGGCTCCCTATTTAGTGGCAA
AGTCCCTGCCTTCTTTTGATGTATACATTCCTTTTGTATTGTGTCACTGT
AACTTGGCTGATGTATCTTGCCTGGTTTCTTGTTACTCTTCAGTATAAAA
AGTTTGATGCTCGACTTGAAAATTTACATTCAGATTCTATACAATCTCTC
ATGTTGGTTCTGTTTGTCATTCATTCACCAACTCCTTGTCCACCTGCCAC
CAGAGAATGGATCTACCCAGACAAGGACCATAAAGGCTCTGGGGCCCCTC
TCTAAGGAAGATATCCTCCAGATTCATCCCTTTGCCCAATATATTCTAAA
TTTCTTTGTTTTTTAAAACCTGAGTAATACCCCCCTTGGGGAAAGGATAC
TGCTTTTTTTCTGAACCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_l08.b1 MSMg01no473_l08.b1 CHROMAT_FILE:
MSMg01no473_l08.b1 PHD_FILE: MSMg01no473_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:54 2005
         (253 letters)



>mm_chrX_8479397_8480049
          Length = 653

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctcccccaagttgggtttctaagtgtctggcgactgttgggccaggaggagagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctctcccccaagttgggtttctaagtgtctggcgactgttgggccaggaggagagacag 260

                                                                       
Query: 61  tgatcaggtctgtggtggtagccccaggccatctatgagtggaggcctaggtttggtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatcaggtctgtggtggtagccccaggccatctatgagtggaggcctaggtttggtgac 320

                                                                       
Query: 121 tagtagagacctcctccatctttgccctttgtctgtgcccacagatgatcagtggtccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtagagacctcctccatctttgccctttgtctgtgcccacagatgatcagtggtccct 380

                                                                       
Query: 181 gccctttctaaacacagtctgcagtctctgtctccctgtcctctgtaagcaaatggactg 240
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccaacctaaacacagtctgcagtctctgtctccctgtcctctgtaagcaaatggactg 440

                      
Query: 241 aggaagttttg 251
           |||||||||||
Sbjct: 441 aggaagttttg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)