BAC Information

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BAC

Clone NameMSMg01-475E13
ChromosomeX (Build37)
Map Location 57,823,680 - 57,823,840
singlet/doubletsinglet
Overlap genenone
Upstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621, Gm715
Downstream geneHspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759, EG245440, LOC100039778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475E13.T7 (MSMg01no475_e13.b1)MSMg01-475E13.TJ (MSMg01no475_e13.g1)
ACCAG557146AG557147
length766765
length of high quality
(start - end)
327 (330 - 656)161 (128 - 288)
definitionCHROMAT_FILE: MSMg01no475_e13.b1 PHD_FILE: MSMg01no475_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:00 2005CHROMAT_FILE: MSMg01no475_e13.g1 PHD_FILE: MSMg01no475_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACACATTTATCCACCAAACAGAAAGACACCTAAGTTTATAATAG
AAACACTACTACAGCTTAATTACATATTGACCATCACACACTGATAGTGG
GAGACCTCAATACTTCACCATCACCAATATACAGGTCATCCAAACAAAAG
GTAAACTGAGGAATACTGGGGCTAACTAATGTTGTAAACCAAATGTACCT
AACATATTTACAAAACATTTCACCCAAATACAAACAAACATACCTTCTCA
GCACCTCATGAATTTTTTCCAATTTTTACTACATACATTAACACAAAGTA
ACCCTTAGCAGATTTTTTTTAAAAAGAAATAATTCCCTATATCCTGATAT
TCATAGATTATTCCTGAATATCAACAACGGAATGTACACAAACTCATGGA
AACTGAACAGTGCACGACTGAATCAAAAAACTGCGTCAAGACAGAAATTA
AGATGACATTAAAAACTTTTTAGAATTGAATGAAAATGAAAATGCAACAT
ATTCAAACTTATGGTACACAGTGACGGCAGTGCTGAGAGGCAAGTTCATA
GCACTACATAAAACAATAGGGGAGATGTAACATTAGCAACGTAATAGCAC
ACCTGAAAGCTCTAGTACAAAAAGAAGAATAACATCCAAATGGAGTAGAC
AGCAAGAAATAATCAAATCTCTAAATCCATAAGTTAATAGAGGAAACTGT
GAAACATCATTCTGAA
CCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACCAGAGACAATCTGNNAAAGCATAGCAATAAA
TATCTCTCAAAGTGAGAGCTCTTGCGGCCTCCTCTCCTGTAATGACAGAA
AAGATGTTTCCTCCATAATTGTGGGTAGTGAAAAGCAAAGTTGGTTTGCA
CAAAACTAGCTACTTCTCTGGCAGACTGCAGATATGTGCAGGTTGTTGGT
GGTGTGGGGGGCAAGGAATGAAATAGAGAGACGTTTGTACTGTGGAGGGC
AGGGGAAGACAAGGATTTTAGTATTTTAGAATTGTATTTTAGTGAATGCT
GCTAACAACATAGTTATGGGCCAAGAGGGTGAAATAGGGGTGGGAGATGG
AATGTGCAGTTCTGTTTTTGCCCCTCCCTCCTTTCTTCTCCTTTATCCTC
CCTTTTTCTTTTTTTCCTCTTTCCACTCTATGTTCTTTATCCCCCTTTTC
TTCTATCTTCTTCTCCACTCTTTTTCTCTCTCTTTTCCTCCCTTTCGTTT
ATCTTATCCCCTTCTGGTTCCTTCTGTTCCTTTTTCTCTCTCTCCCTTTC
TATTCGGTTTTTTTATTCTTCCTCCGATTTTACTCCTTTTTTACTTCTTC
ATTTCTTTTTCCTTACCTCCGATCTTCCTCTTTATTTTTCTACTCTCTCT
TACTCCCATTACTCCTTTTTTTCTTTCTCTCCCCTTTCCTTTCCTTTATA
TTTTCTTTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_e13.g1 MSMg01no475_e13.g1 CHROMAT_FILE:
MSMg01no475_e13.g1 PHD_FILE: MSMg01no475_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:01 2005
         (161 letters)



>mm_chrX_57823480_57824040
          Length = 561

 Score =  296 bits (153), Expect = 5e-85
 Identities = 159/161 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcctctcctgtaatgacagaaaagatgtttcctccataattgtgggtagtgaaaagca 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cctcctctcctgtaatgacagaaaagatgtttcctctataattgtgggtagtgaaaagca 260

                                                                       
Query: 61  aagttggtttgcacaaaactagctacttctctggcagactgcagatatgtgcaggttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttggtttgcacaaaactagctacttctctggcagactgcagatatgtgcaggttgtt 320

                                                    
Query: 121 ggtggtgtggggggcaaggaatgaaatagagagacgtttgt 161
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtggggtggggggcaaggaatgaaatagagagacgtttgt 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)