BAC Information

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BAC

Clone NameMSMg01-476L23
ChromosomeX (Build37)
Map Location 98,903,932 - 98,904,180
singlet/doubletsinglet
Overlap genenone
Upstream geneKif4, Gdpd2, Dlg3, Tex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865
Downstream geneLOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L23.T7 (MSMg01no476_l23.b1)MSMg01-476L23.TJ (MSMg01no476_l23.g1)
ACCAG558265AG558266
length804794
length of high quality
(start - end)
444 (43 - 486)249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no476_l23.b1 PHD_FILE: MSMg01no476_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:57 2005CHROMAT_FILE: MSMg01no476_l23.g1 PHD_FILE: MSMg01no476_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTGCACTAATTCTCGGCTTTTTTTTTTTTGGAGACTTTTAATAAAGGC
TTCTATTTCTTTAGGGGTTATGGGACTCTTTAGATTGTTTATCTGATCCT
GATTTAACTTTGGTATTTGATATCTATCTAGGAAATTGTCCATTTCATAC
ATATCTATAGAACATTTCGTCCTTAAACAAAAGAATATACCTTCTTCTCA
GCAACCCATGGAACCTTCTCCAAAACTGACCATATAATCGATCACAAAAC
AGACCTCAACAGATACAAGAAGATTGTTATTATCACATGCATCCTATCAG
ATCACCACGGGTTAAGGCTGTTATTCAATAGCAACAAGAACAACAGAAAG
CCCACATAAAAATGGAAGCTGAACAACACTCTCTACTCAATGATAACTTG
GTCAAGGAAGACAGACAGACTAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGACTGAAAGAAAGATAGATAGAAAGAAAGATAGATAGA
CAGAAAGACAGAAAGGACGTATGGAAGGAATGAAGTACGAACGATGGATG
GATCGTATTCCTTCCCCTTTTTTTCTTTCCCTCCTTCTTTTCTTTTTCTC
TTTTCCCCCTCCCCTTTCTTTTTTTCCTTTTTTTCCCTTTTCCTTCTTTC
TTCCTTACTTCTTATTCCTCTTCTTTACTTTATTCCTTTTTTCCTCTCCT
CCCCTTACTTCCTCTTTCTTCCTTCCTCTTCCTCCCTTCTCCTTCTTTTT
TCTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGGGGAAAGGCTGGACACTCAGGGTT
TGGGAGTATAAGCCCCCACTTCTGGCTCAGGGGGTTGAGAAGCAGGATAA
ACAAAACGAACTTGGAAAAGAATTGGAAACCCAGCAACTGCCTTCTGCAG
GGATGGGCTCGGGAAGGAGGTAGGGACAGGGCATTTCACATCACTAAACT
AACCTAACTTGGGAAACCGTAAGGGACCGTCTTCAACTGGCCTTAAGAAA
GTAAGACCAAATGGCTGATGGGTTATTCCACAGGAAGGTGAAAAGGGAAC
GTGGCTGGGAGGTGGCAACAAGCCCCTTCCTTTCTGGGCACAGGAAGTCA
GCCAGGGCACAAGGTCCAGGCAGTGACCTCACAAGGACAGCACAGTTTTT
GCAGCTTAGAGATCACCCACCTGTCCCCATCCTTACTCATTCTGCTCAGC
ACTGGCAGGTGCGCAGTGGATGGCTCTGCAGCCTGCGGCCCTGCCTCCTC
TTCTGTGTCTCCTTCCTTGGAGGCAGCACTAGCCTTTGCCTCCTTGACCC
GCGGCTCTTGTCTTCTTAGAATCAGCGGCCTTCCCTTCTTTGTTCAATCG
CCCCCCTCCCTGTTTTCTCTCTCATAACCCCCCGTGTTCTGCACCTCCCC
CCCGCTTGTCAGTAACCCCGCATATAATTATCTCCTCCCTCATTCCCAAT
TCTCTTTCCCCCCCGCCCGCCCCCTCTATTCGTTAATATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l23.g1 MSMg01no476_l23.g1 CHROMAT_FILE:
MSMg01no476_l23.g1 PHD_FILE: MSMg01no476_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:57 2005
         (249 letters)



>mm_chrX_98903732_98904380
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggggaaaggctggacactcagggtttgggagtataagcccccacttctggctcagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggggaaaggctggacactcagggtttgggagtataagcccccacttctggctcagggg 260

                                                                       
Query: 61  gttgagaagcaggataaacaaaacgaacttggaaaagaattggaaacccagcaactgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gttgagaagcaggataaacaaaacgaacttggaaaagaattggaaacccagcagctgcct 320

                                                                       
Query: 121 tctgcagggatgggctcgggaaggaggtagggacagggcatttcacatcactaaactaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcagggatgggctcgggaaggaggtagggacagggcatttcacatcactaaactaac 380

                                                                       
Query: 181 ctaacttgggaaaccgtaagggaccgtcttcaactggccttaagaaagtaagaccaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaacttgggaaaccgtaagggaccgtcttcaactggccttaagaaagtaagaccaaatg 440

                    
Query: 241 gctgatggg 249
           |||||||||
Sbjct: 441 gctgatggg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)