BAC Information

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BAC

Clone NameMSMg01-478O11
ChromosomeX (Build37)
Map Location 135,774,132 - 135,774,453
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl2, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1
Downstream geneLOC675062, Trap1a, C330013F16Rik, EG666359, D330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478O11.T7 (MSMg01no478_o11.b1)MSMg01-478O11.TJ (MSMg01no478_o11.g1)
ACCAG559910AG559911
length728728
length of high quality
(start - end)
324 (313 - 636)555 (69 - 623)
definitionCHROMAT_FILE: MSMg01no478_o11.b1 PHD_FILE: MSMg01no478_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:43 2005CHROMAT_FILE: MSMg01no478_o11.g1 PHD_FILE: MSMg01no478_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAGACGACTCACTTTTCAAAGAGGAGCCGNGGAATTCCTTAA
TGACGAAAAAATGAAAAACTTTCTGAGTCATGACTTCACATAGCCCACAC
TGACGCGGAACTCAATATATCTCAGGCTCACTGTGAGCTTCTGGTCCCTC
TCTTCTTCCTGCCATTGGGAGTGCTGTGAATACATGTATGCGCCATCTTG
GCCAGCAAACATGAGACTCTTAAATACCTAAAATCATCTGAACCTTCAGG
TGGACAATAGCAGTAATTTCCAGCTGCTGAAAGTAGATGTTCAAGCATCT
TGGAATTTATTATTGAGGCAGACAAGTGTTCTCCTTTAGGCTAAATAAGA
ATATGTATGGTTAAATATACACATTGCAAAGGTAAAATCCAAAGCCAGTG
AACTGGTAGTTCTAAATTGATGTGAGCTTTTGTAAAAATAAATGTTAGCT
AAGCTAATGCTCACATTAAAAAAAAAATCAATGCTTAGAGCTAACCACAT
TTTAGCTGTTTGTGTGGTTCATCTGAACCTCCTTTGTGATAGCATCCATA
TTTAGTGTAATATGGCTATCAGCTCCATGTTCGTCTTCTACTGGGAGAAG
GGACTAATTTTCCTTCCCATGCCCTTCACCTTACAGAAGCTCCCTCTAAT
GAAAATTAAGTTTGTATTTCTTATTGAATGAGTGCCTCTCCATTTCCCTT
TTATTAATACACTTTGTTGGAGAGGGGN
TGTGAGGCCTGGNGGNCGCCATTTCTCATCGTGGATGTNGAANNATANAA
TGACAAAAACAGGTCCNCTACACTAGGGCATTGAGCCTTCACAGAACCAA
GGGCCTCTTCTCCCATTGATGCCCAACACGGCCATCCTCTGCTACATATG
TGGCTGGAGTCATGGCTCCCTCCATGTACACTCTTTGGTTGGTGGTTTGG
TGCCTGGGAACTCTGGGAGCTCTGATTGGTTGATATTTTTGTTCCTTCTA
TGGGGTTGCAAACCCTTTCAGCTTCTTCAGTCCTTCCCCGAACTCCTCCA
TTGTGATCCTTTCTCTGTCCAATGGTTGGCTGTGAGCATCCACTTCTGTA
TTAGCAGGGCCTCTCAGGAGACAGCTATACCAGGCTCCTGTCAGCAAGCA
CTTCTTGGTATCTGCAATAGAGTCTGGGTTTGGTGTCTGCATATGGGATG
GATCCCCAGGTGGGACAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTC
CACTCTTTGTCCCTGTATTTCTTTTAAACAGGAGCAATTTTGGGTTGATA
TTTTGGAGATGGGTGGGTTGCCCCATCCCTCTATTGGGGTCCATGCATAA
CCTCTGGATATGGTCTCAACAGGATCTCCCTTTCTTTTGTGGGGTATTTC
AGCTAATGTTATCCCTGTGGGGTTCTGGGAGGCTCTTGCTTCCCTGGCAT
CTGGGACTTTCTGGTTTTTACCCCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_o11.b1 MSMg01no478_o11.b1 CHROMAT_FILE:
MSMg01no478_o11.b1 PHD_FILE: MSMg01no478_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:43 2005
         (324 letters)



>mm_chrX_135773931_135774653
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%), Gaps = 1/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgaggcagacaagtgttctcctttaggctaaataagaatatgtatggttaaatatacaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgaggcagacaagtgttctcctttaggctaaataagaatatgtatggttaaatatacaca 261

                                                                       
Query: 62  ttgcaaaggtaaaatccaaagccagtgaactggtagttctaaattgatgtgagcttttgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgcaaaggtaaaatccaaagccagtgaactggtagttctaaattgatgtgagcttttgt 321

                                                                       
Query: 122 aaaaataaatgttagctaagctaatgctcacattaaaaaaaaaatcaatgcttagagcta 181
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 322 aaaaataaatgttagctaagctaatgctcacatttaaaaaaaa-tcaatgcttagagcta 380

                                                                       
Query: 182 accacattttagctgtttgtgtggttcatctgaacctcctttgtgatagcatccatattt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacattttagctgtttgtgtggttcatctgaacctcctttgtgatagcatccatattt 440

                                                                       
Query: 242 agtgtaatatggctatcagctccatgttcgtcttctactgggagaagggactaattttcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtaatatggctatcagctccatgttcgtcttctactgggagaagggactaattttcc 500

                                  
Query: 302 ttcccatgcccttcaccttacag 324
           |||||||||||||||||||||||
Sbjct: 501 ttcccatgcccttcaccttacag 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)