BAC Information

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BAC

Clone NameMSMg01-482B07
ChromosomeX (Build37)
Map Location 160,220,302 - 160,220,541
singlet/doubletsinglet
Overlap genenone
Upstream gene4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr, 1700045I19Rik
Downstream geneAp1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482B07.T7 (MSMg01no482_b07.b1)MSMg01-482B07.TJ (MSMg01no482_b07.g1)
ACCAG562336AG562337
length712843
length of high quality
(start - end)
240 (69 - 308)---
definitionCHROMAT_FILE: MSMg01no482_b07.b1 PHD_FILE: MSMg01no482_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:55 2005CHROMAT_FILE: MSMg01no482_b07.g1 PHD_FILE: MSMg01no482_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACACAGGATCCGCGGAATTCA
ACTTTTTATGCCCAAGAAGAATAAAGAAATTCAGACAATGCATAAAGGGA
GTCAGTTTTAAATATTTGTTTATTTAAATGTATGAGTATGTGCACCACAA
GCATGTAGGAGCCCTTGGAGATCAAAAGAGGCGTTGAGGCGTTGATCCCC
CCAGGTGCTGGGGACCAATCCAAGGCACTCTGCAAGAGCAGCAAGCGCTC
TTAACCATTAGGCCATTTCTATTGTCCTGAACATAGATTTATTAAGATTT
TAAAAAAGGTATTTTTTAATGCTTGAGAGTGGGAAGGGCTTCAAAGGAGG
AGTACAGTCACCTTGACCCACTAAGTCCGTAGTTCTCAACAATCCCAATG
TTGTGACTCTTCAGTGCAGTTCATCACATTGTGCTGACCCCCAATCATAA
AATTATTTTTGTTATTACTACTTCATAACTAATTTTGCTTCCGCTATGAA
TTGCAATATAAATATCTGATATACGGAATATCTCATGTGCAATCTCAAGG
GGTACAAACTCACAGGTTGAAACCACTGAACTAAGCGGTTCCTTTATGGG
GTTTATTGTGAGAACTACTAGAAATTGCGGTCATTTTCAGTGAGGTTGAT
CATGGCTGAGCTCATCATGGTAAGTCCGCAAGAACTATATCAGTCCTGAG
AGTGCTCCTTCN
CCATGATATNNNTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCAAAATTCTTANATCANGNTGNNAAANGAAATAAA
ACCCATCTTCTTAANCNCACACAATTAANCAANTTANAACTTGCCCTTAA
ATGTTAATGNNCCTGTATACANTGCAAGGAACTTTAGAAATTGAGTCGGG
GCTGGGGGGGTGGGGNTCNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNT
ATTTGTGGTGGGTNNNNCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTNTNNNTTNNTTTNNTNTNNNNNNNNNNNNNNNNNNNN
NNNNTNNNNNNNNNNTNNNNTNNTTTNNNNTTTNNNTTTTTTTNNNTTTT
TTTTTTTTTTTNNTTTTTTTTTTTTTTTTCCCCCCCCCCGGGNNNNNNNN
NNNNNTNNTNCNNNTCCCCNCNCCTTCCNNCCCCCCCCNCCCCCCCCCCC
CCCCCCCCTTCTTTCCCTCCCCCCCCCCCCCCCCCTTCNCCCCCCTTCCC
NCCCCCTTCCCTCCCTTCTCCCCCCCTTCCCCCCCCCCTCCCCCCCCTTC
TCCCCTTTTTATTTTTCCCTCCTCCCCCCTCCNCCCCCTCCCCTTTCCCC
TCTCCCCCCTCTCNCCCTTCCCTCCCCCCTTCTTTACCCTCTCCCCCCCT
ACCTTCTTTTCCCTCTTCTTCTTCTCCCTCCCTCCTTCCTTTTTCCCTAT
CTCTTTTCTTCCCTCCTCCTCTCCCTTTTTTTCCTTTTCCCTCCCTCCTT
CCNNCCCTTTCTTCTTTTATATATTTTTATTTGGGGTATGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_b07.b1 MSMg01no482_b07.b1 CHROMAT_FILE:
MSMg01no482_b07.b1 PHD_FILE: MSMg01no482_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:55 2005
         (240 letters)



>mm_chrX_160220102_160220741
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaataaagaaattcagacaatgcataaagggagtcagttttaaatatttgtttatttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaataaagaaattcagacaatgcataaagggagtcagttttaaatatttgtttatttaaa 260

                                                                       
Query: 61  tgtatgagtatgtgcaccacaagcatgtaggagcccttggagatcaaaagaggcgttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatgagtatgtgcaccacaagcatgtaggagcccttggagatcaaaagaggcgttgag 320

                                                                       
Query: 121 gcgttgatccccccaggtgctggggaccaatccaaggcactctgcaagagcagcaagcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgttgatccccccaggtgctggggaccaatccaaggcactctgcaagagcagcaagcgc 380

                                                                       
Query: 181 tcttaaccattaggccatttctattgtcctgaacatagatttattaagattttaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttaaccattaggccatttctattgtcctgaacatagatttattaagattttaaaaaag 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)