BAC Information

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BAC

Clone NameMSMg01-482J04
ChromosomeX (Build37)
Map Location 53,388,966 - 53,389,448
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263
Downstream gene3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482J04.T7 (MSMg01no482_j04.b1)MSMg01-482J04.TJ (MSMg01no482_j04.g1)
ACCAG562707AG562708
length726619
length of high quality
(start - end)
599 (37 - 635)---
definitionCHROMAT_FILE: MSMg01no482_j04.b1 PHD_FILE: MSMg01no482_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:31 2005CHROMAT_FILE: MSMg01no482_j04.g1 PHD_FILE: MSMg01no482_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGG
TTATCCAGAGCTATACAGATAAACCCTGACTTGAAAAAAAAAAGAGAAAA
TGAAAAAGAAATTTGGAATATATTTGAGAATAAAACAGATGTCTATATCT
GGCCTCGTTATGCACCCATATACTGAAATGTATACACTCCATTTTTATCC
TGAAACTTTATATGATTTACACAATCCATTAAAATTATGTTTTTTTGTTG
CTCTTTTGTTAGTTTGTTTTTTTGTTTCTGTTTCTGGAAATAGACAACAT
TAACAAAGTCATTTTTTTATACTCTCCATTATATAGTAAAATTAAACATC
TATCATGAGAAATGGTCCAGCACACCTTAAAACACACACAGGATAGGAAT
GGAAAGATGGCTTAGAAATTAAGAACACTTGTTTCTCTTGGACAGAACCA
AGGTTTAGTTCCTAGAACCCTCATAATACTCAAAACCATTTTTAATTCTA
GATGCAGGGATTTTGGCATCATATTCTAGTTTCTAGGGGAACTAGTCATA
CATGTTATATAAATACAAACATGCAAAAACACTTTAGTTTAAAAAAAAAC
AAAAACCAACAAAAAAAACCAAAAAAAAAACAAACAAACAAACAAACAAA
AAAAACAATTTAGAGTTACACAGAACAGCCCCTTCATCTGNAACGAAGTA
NGAGAGTCCTCTTTGGAGTTCATTTN
AAAAAAAAGGCGGGGCGAGGACCNACNGAGAACCCCCGACAGGGGACCAG
AAAAACCACCGAGGGGGCCCCCCGAACCCGCCCCCGCGGCGCCCGGGGCC
AGAGCGGCAGCACGACCCCCCACCAAAAAGGCAAGAAGCAACCCGAGAAA
CGCCCAAGAACAAAGCCAAGCCACCCAACCCACCCAGCCAACAAAGCGGA
GNGGGNACCCCCCAAGGCGACGCCCCCAGGGGGGGGGGAGGGGGNNNCNG
GGGGGGGCAAACGCAGNNAGGGCAGACGGACAGAAAGCGAGGNNNNNNCC
CCNCNNNNCCNNNNNNNNNNNNANNAAACCGGAGGGGCAGCGANNNGANG
AGANNNNNNNNNNNNNGGAGGGGNGGGGGAGGACCAAAANNNCNGGGGAG
AGAGGGGGAGAGGNNCGGGCGCAGCAAAAAGGGGGGGNAGAGGGCCCCGG
GGGGGGGACCGNCCCGGGGCCCNGGGGCCCCCAGNNNAGGGGAGACCCCA
AAAGANCAGGGAAAAGGGCCGGGGGAACCCGACCGCCNNNACCCCAAAAA
GGGGGAAAAGAAGGGGAGGACCCCCGGNNGGACACGGCGAAAAGGAGGAA
ACCGGGGGGGGCCCCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_j04.b1 MSMg01no482_j04.b1 CHROMAT_FILE:
MSMg01no482_j04.b1 PHD_FILE: MSMg01no482_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:31 2005
         (599 letters)



>mm_chrX_53388702_53389700
          Length = 999

 Score =  364 bits (188), Expect = e-104
 Identities = 421/520 (80%), Gaps = 57/520 (10%)
 Strand = Plus / Plus

                                                                       
Query: 67  aaaaagaaat---ttggaatat-atttgagaataaaacagatgtctatatctggcctcgt 122
           ||||| ||||   ||||||||| | ||||||||| | ||||||||||| ||||||||| |
Sbjct: 265 aaaaa-aaataagttggaatatga-ttgagaatatagcagatgtctatttctggcctcct 322

                                                                       
Query: 123 tatgcacccatatactgaaatgtatacac-tccatttttatcctgaa--actttatatga 179
           ||||||| ||||||||||||||||||||| | ||||||  | |||||   |||| |||||
Sbjct: 323 tatgcacacatatactgaaatgtatacacat-catttt--tgctgaatctctttttatga 379

                                                                       
Query: 180 tttacacaatccattaaaattatgtttttttgttgctcttttgttagtttgtttttttgt 239
           ||||||||||||||||||||||||       ||                 ||||||||  
Sbjct: 380 tttacacaatccattaaaattatg-------gt-----------------gttttttt-- 413

                                                                       
Query: 240 ttctgtttctggaaatagacaacattaacaaagt--catttttttatactctccattata 297
            ||| ||||||||||||||||| ||||  |||||  ||| |||||||| | |||| | ||
Sbjct: 414 -tctttttctggaaatagacaatattaggaaagtgtcatatttttataatgtccactgta 472

                                                                       
Query: 298 tagtaaaattaaacatctatcatgagaaatgg-tccagcacaccttaaaacacacacagg 356
           |||||||| |||||| |||||| ||||||| | ||||||| |||||||| ||||||||||
Sbjct: 473 tagtaaaaataaacacctatcaagagaaattgatccagcataccttaaa-cacacacagg 531

                                                                       
Query: 357 ataggaatggaaagatggcttagaaattaagaacacttgtttctcttggacagaaccaag 416
           | ||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 532 acagggatggaaagatggcttagaaattaagagcacttgttgctcttggagagaaccaag 591

                                                                       
Query: 417 gtttagttcctagaaccct-cataata-ctcaaaaccatttttaattctagatgcaggg- 473
           ||||||||||||| ||| | ||| ||  |||| | |||||||||||||||||| ||||| 
Sbjct: 592 gtttagttcctaggacc-tacatgatggctcacagccatttttaattctagatccagggg 650

                                                                       
Query: 474 attttggcatcatattctagtttctaggggaact--agtcatacatgt--tatataaata 529
           |||| |||||| | ||||| |||||| |  |||   |||||| |||||  | ||||||||
Sbjct: 651 attt-ggcatcctcttctattttctacg--aaccccagtcatgcatgtgttgtataaata 707

                                                   
Query: 530 caaacatgcaaaaac-actttagtttaa-aaa-aaaacaa 566
           ||||||||||||||| || |||||| || ||| |||||||
Sbjct: 708 caaacatgcaaaaaccacgttagttaaataaataaaacaa 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)