CACCNTTNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXNCGCGGAATTCTATATTCCGTTAAGGAATTATTGTTCTCATTAT
AGTAGATTAACTCACCTTAATATAATGAGCGCATTGCAAACAAAATCCCA
TAGCTGGAAGATCAAATTGAACAATTAAGAAAATTCACTATTTTTTATTA
AACATGTTTCTAAATGTTTTTTATTTATTATTTATTAATTAAGGTTACTA
TACATTATAATTATCTAGGACAGTCAGTGTTTATACAAATTATAATAATT
TCTTTGACTCTCAAAAGTATACTTATTTTGAGGCAAACATTGTTATTTCT
ACTCATCAGTACAGGCCTAAATATTGTATGATGTTACATAAAGATGGCAA
GCAAATATCCCTTCCCTGGAGGAGCATAAGAAACATCTTCAAGGGATAAG
ATATGTATTTACTACTACTACATAGTAGTATCTGTGTGTTTAAATTGAAA
GCTTTGTATTGTAGTTAGCTCAGTAAGCAGAGAAGTTATAAGGTTTGGTT
AGCCCAGGTTTTTGACTACTTCTCCAAAGGGGGTTGATGCATGAAGCCCC
CTGAAAAAATTTATAGGGATGAGGCCCCTATGGTTCCAAGCTGAACCCCT
CTGGGGGAAAAAAATGGAGCCCAAAAAAAGGCTGTTTTGAGAAAGACCCC
AGGG

NCCCTTTTCCCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAAT
ACCGAAAGGCTGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATC
AGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAG
AATGGCTAAGACCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAA
CCACTCTGGAAATCAGTCTGGCGTTTCCTCTGAAAATTGGGCATAGTACT
ACAGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCC
CAACCGGTAAGAAGGACACGTGCTCCACTATGTTCATAGCAGCCTTTATT
TATAATAGGCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGTGGAAT
GGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATT
AAAATGAATGAATTCACGAAATTCCTAGGCAAATGGTTGGACCTGGAGGG
CATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGAAATGT
ACTCACTGATAAGTGGATATTAACCCAGAAACTTAGTATATCGAGATATA
AGGTACAATATGTAAAACATATGAAACTGAAGAAGAACG

Query= MSMg01no483_a11.b1 MSMg01no483_a11.b1 CHROMAT_FILE:
MSMg01no483_a11.b1 PHD_FILE: MSMg01no483_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:04 2005
         (384 letters)



>mm_chrX_143432182_143432965
          Length = 784

 Score =  714 bits (369), Expect = 0.0
 Identities = 379/383 (98%), Gaps = 4/383 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctat-at-tccgttaaggaattattgttctcattatagtagattaactcacctta 61
           ||||||||| || |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctataatgt--gttaaggaattattgttctcattatagtagattaactcacctta 261

                                                                       
Query: 62  atataatgagcgcattgcaaacaaaatcccatagctggaagatcaaattgaacaattaag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atataatgagcgcattgcaaacaaaatcccatagctggaagatcaaattgaacaattaag 321

                                                                       
Query: 122 aaaattcactattttttattaaacatgtttctaaatgttttttatttattatttattaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaattcactattttttattaaacatgtttctaaatgttttttatttattatttattaat 381

                                                                       
Query: 182 taaggttactatacattataattatctaggacagtcagtgtttatacaaattataataat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taaggttactatacattataattatctaggacagtcagtgtttatacaaattataataat 441

                                                                       
Query: 242 ttctttgactctcaaaagtatacttattttgaggcaaacattgttatttctactcatcag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctttgactctcaaaagtatacttattttgaggcaaacattgttatttctactcatcag 501

                                                                       
Query: 302 tacaggcctaaatattgtatgatgttacataaagatggcaagcaaatatcccttccctgg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tacaggcctaaatattgtatgatgttacataaagatggcaagcaaatatcccttccctgg 561

                                  
Query: 362 aggagcataagaaacatcttcaa 384
           |||||||||||||||||||||||
Sbjct: 562 aggagcataagaaacatcttcaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)