BAC Information

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BAC

Clone NameMSMg01-483G19
ChromosomeX (Build37)
Map Location 70,712,957 - 70,713,468
singlet/doubletsinglet
Overlap genenone
Upstream geneGabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip
Downstream geneBgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483G19.T7 (MSMg01no483_g19.b1)MSMg01-483G19.TJ (MSMg01no483_g19.g1)
ACCAG563356AG563357
length776774
length of high quality
(start - end)		555 (53 - 607)512 (82 - 593)
definitionCHROMAT_FILE: MSMg01no483_g19.b1 PHD_FILE: MSMg01no483_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:37 2005CHROMAT_FILE: MSMg01no483_g19.g1 PHD_FILE: MSMg01no483_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGCTCTCCAACTTGACCTCAGTCAGGACTCTCCTGGC
TCTCCATATGTGATCATTTCACCTACTTCATCAACAGGGACACATGTAGC
TCACCACAATATCTAAAACCCTCTTTCTCCTCCAGGGTGGTCCCAAGTAT
TCCTCACTTCCTCTTGCCCTGTGGAAAACCATGTCTGCCCTGTGTGAGCC
TGGCCAATGTGCACCTCTGCCATAGCCGGCACGGCCTGTAATAGCGCACG
AGTGACTTGGAGCTCTCAGTTGTGCATGCATAAACCTGGAACTCACCTAG
GAAGAGCCTAGTGTGTCAGGAACATCTCCGCTCCCTGTTTTCAGTCACCC
TTAAAGTCTGACTTCATGGAACTTGTGTTCTGATCCCCCAAGCTTCGTGT
GTGCGCATCCCATGATGTGATGATGAAGCATGATGCTACAGATGCTACAC
GGATACCCTGGTTTGTGGGCTTGAACACATACTTGGTATTCCCAGGTATG
CTTTCTAACTGAAATTAGAATTATTTGGGGCTGAGAATGAATTATGTGGG
GCTGAGAATGCCCCACGTGAGGGAAGCAGAAGCATGTGCAAGCCTGAGAA
GGGTAGAAGGCGTCATGTACTCGATAGGTGTGCCTCGGGCATCTGTGGTT
TCCAGTGTACCCTGTGAGGGGTGGGTGGGCTCTCACGTGTTCCAAGCATG
ATGCCTGGATGGTGAAAAGCATGGTG

NTTTTTCGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCCCCTACCCACTTCC
CCTGTTCTTGAAGCTCCCCAGGCTCTGACTAAACATCCTGCCATCTGGTT
CCCATTAGCTGGGCTGGGGGGTTGGGAGAAGCCTACTCCCAGGTTTCTCT
GGCACAGCCAGTCTGGGAGAGGGAGAGACATTCCCTCTTCCCCACCTAGG
CAGGAAGCCCAAACAAAGTCTGAGGTGCTCCCAGTTGCTCCTATGGATCC
CTGGGCTGGATGCTGTTCTCTTAGTTTGGAAGTGCAGTGACCAACCCAGG
TGGGTACTTGGGGAATGATACTTCTGCAAGCTGCTCTGTCTATCCAGACA
CCCCTGGAACCTTGGGGATCCTTGAGTGTCCCCATAGAGCAGAAGCAGAT
TGTGGAGAGAAGCTCAGCCGCGTCAACAGTTCCCATAAGTTTTGGGTTTT
GTACTCCCCTCTTCTCAAGAGCTCATTTGCACACTCAGACTGAGCCAGCC
AGGGCCCCAGGCCAGCACAGATTCTAAGCCCATGTCTGGAGAGGAGGATG
GGAGGGACACTGGGATTTTCCAGGAACTGGGATGAAGCCTGGGACTTGCT
ATAAAGGGCTTCAGACTTCATGCTTTGCTATGACCTGACTGGTCCTGTGA
TTTTAGGAGCAAAACTCCCTGCTCAGTGCCTCGGTTCTTCATAAGGGAAA
AAACACTCCTATAAACGTATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_g19.g1 MSMg01no483_g19.g1 CHROMAT_FILE:
MSMg01no483_g19.g1 PHD_FILE: MSMg01no483_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:37 2005
         (512 letters)



>mm_chrX_70712757_70713668
          Length = 912

 Score =  975 bits (504), Expect = 0.0
 Identities = 510/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggccccctacccacttcccctgttcttgaagctccccaggctctgactaaacatcctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tggccccctacccacttcccctgttcttgaagctccccaggctctgactaaacatcctgc 653

                                                                       
Query: 61  catctggttcccattagctgggctggggggttgggagaagcctactcccaggtttctctg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 catctggttcccattagccgggctggggggttgggagaagcctactcccaggtttctctg 593

                                                                       
Query: 121 gcacagccagtctgggagagggagagacattccctcttccccacctaggcaggaagccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gcacagccagtctgggagagggagagacattccctcttccccacctaggcaggaagccca 533

                                                                       
Query: 181 aacaaagtctgaggtgctcccagttgctcctatggatccctgggctggatgctgttctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aacaaagtctgaggtgctcccagttgctcctatggatccctgggctggatgctgttctct 473

                                                                       
Query: 241 tagtttggaagtgcagtgaccaacccaggtgggtacttggggaatgatacttctgcaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tagtttggaagtgcagtgaccaacccaggtgggtacttggggaatgatacttctgcaagc 413

                                                                       
Query: 301 tgctctgtctatccagacacccctggaaccttggggatccttgagtgtccccatagagca 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgctctgtctatccagacacctctggaaccttggggatccttgagtgtccccatagagca 353

                                                                       
Query: 361 gaagcagattgtggagagaagctcagccgcgtcaacagttcccataagttttgggttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaagcagattgtggagagaagctcagccgcgtcaacagttcccataagttttgggttttg 293

                                                                       
Query: 421 tactcccctcttctcaagagctcatttgcacactcagactgagccagccagggccccagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tactcccctcttctcaagagctcatttgcacactcagactgagccagccagggccccagg 233

                                           
Query: 481 ccagcacagattctaagcccatgtctggagag 512
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ccagcacagattctaagcccatgtctggagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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