BAC Information

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BAC

Clone NameMSMg01-484D03
ChromosomeX (Build37)
Map Location 81,916,336 - 81,916,860
singlet/doubletsinglet
Overlap geneDmd
Upstream geneLOC100042306
Downstream geneLOC100042296, LOC669833, 1600014K23Rik, Map3k7ip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484D03.T7 (MSMg01no484_d03.b1)MSMg01-484D03.TJ (MSMg01no484_d03.g1)
ACCAG563942AG563943
length811709
length of high quality
(start - end)
---632 (78 - 709)
definitionCHROMAT_FILE: MSMg01no484_d03.b1 PHD_FILE: MSMg01no484_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:40 2005CHROMAT_FILE: MSMg01no484_d03.g1 PHD_FILE: MSMg01no484_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCCCACCGTGTTAAATGGAAATATATTATTATCCACAATAAATAAA
TGANGAATAATAATCTCTCACGAAAAGAAACAACTCGACAGCCTCTCCTA
CATATTAAATTTAATAATCCGATAGAGCGGCAGATTGCTAAATCTTAAAT
TATAAAAATTATTAAAAATTCTTATACGCCCACCCCTTTCTTTATCATCT
GTACGACCGCTCTTATACATACCCACGACCANCGCGTGGTGTTGAATTTC
TATTTAGGGGAGGTTTCCCCCGCCTAAAGTATTCTCCCCCTAAAAAAAAA
AAAAAAAAATTTTTGCGGCGGGCGCGGGGCCTCTCCGCGNCGCCCCCACC
GGCTTACAATTCCACGACACACATCGTGTTGTTCTCATTGCCGCCCTTTT
CCAACGCCATGTGCACAAAAAAGACACCAAATAAATCCGATACACCCACC
AAATAACCCGCCCCCCCCGGATTAAATATCCCTGCCCCCCGCGGAAAAAA
AAAAAAAAAAAACCTAACCCTATTCGATTAATATGGAAATCGCGCCATCT
ACCGAAACATCCCCGACTACAATCCCTTAACCCTCACCCGCCAACAAACC
TANCACTAGGAGCGCCGAACGAGCGGGGAAAAAAAAAAAAAAAAAAAAAA
AATAATGTTTTTTATTCTTTAACCAACCCAACCCCCCCCACAAAAACAGC
CAAAAGAAAAAGAACTACGTCATTTTTAAATTACTGATGCGCAGAAAAAC
ACCACCTTCTTTTTCCACTATTCTTCCTTAGACTCAATCACCGCACAACA
ATAAAATTGCG
CTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTTCATGTCTTAGTCAAACG
CTTTCTTTGTGTCTTAGGTAGTCTGAATACAAATGACAGCATTCCTAAGC
TGGAAAATATGGAGAAAGTATGGGAGACTGACTAAGGAAGCAATGAAAGG
ATTCCTTAATATCAAACTAATTGAAAGCTAGCAATTACTTCTCTTGCATT
GGAGGTTGATAAAGTTGGTATATTTTAAGGTGTATTTCTATTACTTTATT
TTTCTTATCTAATAACTAGATTCAATGATTGCAGTATTTTGTTTTCAGCC
CTTAGAGTCTATAATCTATAGGTACTGCAGTTCCAAGATTCAAGAGAAGA
ACAATATAATTATTTATTTTTAAAAGACCCCTTTTACCAATAAGTCATTA
ATTATGCATATTCTATATAACCCTATGACCAAACTTCTACTGGGCAAAAT
TTCCCTTGAAGTATCCAATAAACGTATAAATTTTAGATATTACTTGGAGA
TTAGAACTTGGTTGAACTGGCTTCATTCATCTTTCTAGATTTAAAGGCTT
GAATAATTCATTACTCAGAGCTCTTAATAGTTATAAATAATGCAATTTAA
AAGATCATATCAGGGAGAAAAAATTAGTTTAAAGACCAAGTCTTCCTAGG
CATCATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_d03.g1 MSMg01no484_d03.g1 CHROMAT_FILE:
MSMg01no484_d03.g1 PHD_FILE: MSMg01no484_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:40 2005
         (632 letters)



>mm_chrX_81916336_81917367
          Length = 1032

 Score =  977 bits (505), Expect = 0.0
 Identities = 520/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagttcatgtcttagtcaaacgctttctttgtgtcttaggtagtctgaatacaaatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caagttcatgtcttagtcaaacgctttctttgtgtcttaggtagtctgaatacaaatgac 466

                                                                       
Query: 61  agcattcctaagctggaaaatatggagaaagtatgggagactgactaaggaagcaatgaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agctttcctaagctggaaaatatggagaaagtatgggagactgactaaggaagcaatgaa 406

                                                                       
Query: 121 aggattccttaatatcaaactaattgaaagctagcaattacttctcttgcattggaggtt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 405 aggattccttaatatcaaactaattgaaagctagtaattacttctcttgcattggaggtt 346

                                                                       
Query: 181 gataaagttggtatattttaaggtgtatttctattactttatttttcttatctaataact 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 345 gataaagttggtatattttaaggtgtacttctattactttatttttcttatctaataact 286

                                                                       
Query: 241 agattcaatgattgcagtattttgttttcagcccttagagtctataatctataggtactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agattcaatgattgcagtattttgttttcagcccttagagtctataatctataggtactg 226

                                                                       
Query: 301 cagttccaagattcaagagaagaacaatataattatttatttttaaaagaccccttttac 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ctgttccaagattcaagagaagaacaatataattatttatttttaaaagaccccttttac 166

                                                                       
Query: 361 caataagtcattaattatgcatattctatataaccctatgaccaaacttctactgggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 caataagtcattaattatgcatattctatataaccctatgaccaaacttctactgggcaa 106

                                                                       
Query: 421 aatttcccttgaagtatccaataaacgtataaattttagatattacttggagattagaac 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 105 aatttcccttgaagtatccaataaacgtataaattttaggtattacttggagattagaac 46

                                                        
Query: 481 ttggttgaactggcttcattcatctttctagatttaaaggcttga 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ttggttgaactggcttcattcatctttctagatttaaaggcttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)