NNNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATCATTACTTCCTGGCTGGATTTAAGTCCCTCTCCACA
AAATAAAACACACACACATACTCTCTCTCTCTCACTCTCTCTCTCTCTCT
TTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACATATCCTCA
TTGTTGTAGTTATATTTTTGTTACTGTTACGCGACACCATTAGCAAGACA
GCTTATAAAAGAAGCCATTTCATAGGGTGAGTTGATGACCATCATGATAA
GGAGCATAGAAGCCATGGCACTGATACAACAGCTGGGAGCTTATATGTTG
AAATAACAACCACCAGGCAAAGAAAGTACAAACTAGAATGGTGTGGGCTT
TTGAAACATCAATTCCACCCCCAGTTCTCATCCCTACTCCAATAATAACC
CATCTACTCCAACAATACCATAGTTCCTAATCCTCGCCAAAGTTTTTTAC
TGCTGTGGATCTATTCAAATATATAAGCGTCTGCGGGTCATTTTCCTTGC
ATCAGAAATGCATTCTGTGTACCATTATATGTTGGGAAAGTAACTATAGC
ACAGGTCATAGGCACTAGAAGAGAACCTGCTACTATCATTCTGCAAAATG
AATATATCAAAATAATAAATAAAATAAAAATAAGTAAAAAAATAAATAAG
GGCTTGGATATCATTGCAGAAGAGGGCACAGAAACAGTGTAAGAGTN

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCCATTTTAACTTTATGG
TTTGTTTTTCTTTTTTGGGGGGGGGTTGGTAAGCAGGAGAGGAGGAAAAC
ATGAGCAATGAGTAGATATAATTACTTTTGAAAAAAATAGGTCAAACTTG
ATAAAAGCAAGAACCTTTCCAAAAGCAATTTGTTAAAATATGATTGCTAA
GTGGCTGCTTAATTGACTATATTCAGTTATTCAGAAAATGAATGGCGTTT
TGGCTGAACTCTATCATAAAAATTACCATTTTCTATGTGGTGATGGCCAA
AAGAAATACAGAAAGCGACCAAATTAATTTGATTTTGTCATAGTATTTGC
CAGTTTTTCCCATCTAATGGACACACCAAATTGTTTTAGCAAATAAAAGG
GAAATAATTTCCCAGGTTTTAGGATATAGCATGATCATTTTACCTAGAAG
GTGATGTATTCTGAACAAAAATGTTTTTGTGGTAGGTACTTCAGCATTTT
ATAATACCAAGGCTTGAAATTCCAGCTTTGATATGAATTCTACTTACTAT
ATTACTTCATATGGATCCACTTAATTATTACATTAGAATTTTTAAAATCT
TACAATAGAAGAATGTTCAGTAACACCTGGGAAACTTCTTCAAATATGAT
CTGAATCATTTGTTGAAACAGTTGCAATAGATATTGTCACGGTGCCTN

Query= MSMg01no484_h02.g1 MSMg01no484_h02.g1 CHROMAT_FILE:
MSMg01no484_h02.g1 PHD_FILE: MSMg01no484_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:01 2005
         (597 letters)



>mm_chrX_40527119_40528118
          Length = 1000

 Score = 1056 bits (546), Expect = 0.0
 Identities = 581/600 (96%), Gaps = 13/600 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgccattttaactttatggtttgtttttc---ttttttgggggggggttggtaagcag 57
           |||||||||||||||||||| ||||||||||   ||||||| ||||||||||||||||||
Sbjct: 201 tttgccattttaactttatgttttgtttttctttttttttgagggggggttggtaagcag 260

                                                                       
Query: 58  gagaggaggaaaacatgagcaatgagtagatataattacttttgaaaaaaataggtcaaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaggaggaaaacatgagcaatgagtagatataattacttttgaaaaaaataggtcaaa 320

                                                                       
Query: 118 cttgataaaagcaagaacctttccaaaagcaatttgttaaaatatgattgctaagtggct 177
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 cttgataaaagcaagaacctttccaaaagcaatttgttaatatatgattgctaagtggct 380

                                                                       
Query: 178 gcttaattgactatattcagttattcagaaaatgaatggcgttttggctgaactctatca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttaattgactatattcagttattcagaaaatgaatggcgttttggctgaactctatca 440

                                                                       
Query: 238 taaaaattaccattttctatgtggtgatggccaaaagaaatacagaaagcgaccaaatta 297
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 taaaaatgaccattttctatgtggtgatggccaaaagaaatacagaaagcaaccaaatta 500

                                                                       
Query: 298 atttgattttgtcatagtatttgccagtttttcccatctaatggacacaccaaattgttt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgattttgtcatagtatttgccagtttttcccatctaatggacacaccaaattgttt 560

                                                                       
Query: 358 tagcaaataaaagggaaataatttcccaggttttaggatatagcatgatcattttaccta 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcaaataaaagggaaataatttcccaggttttaggatatagcatgatcattttaccta 620

                                                                       
Query: 418 gaaggtgatgtattctgaacaaaaatgtttttgtggtaggtacttcagcattttataata 477
           ||||||||||||||||||||||||||||||||||          ||||||||||||||||
Sbjct: 621 gaaggtgatgtattctgaacaaaaatgtttttgt----------tcagcattttataata 670

                                                                       
Query: 478 ccaaggcttgaaattccagctttgatatgaattctacttactatattacttcatatggat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccaaggcttgaaattccagctttgatatgaattctacttactatattacttcatatggat 730

                                                                       
Query: 538 ccacttaattattacattagaatttttaaaatcttacaatagaagaatgttcagtaacac 597
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ctacttaattattacattagaatttttaaaatcttacaatagaagaatgttcagtaacac 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1000
Length adjustment: 10
Effective length of query: 587
Effective length of database: 990
Effective search space:   581130
Effective search space used:   581130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)