Query= MSMg01no486_j12.b1 MSMg01no486_j12.b1 CHROMAT_FILE:
MSMg01no486_j12.b1 PHD_FILE: MSMg01no486_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:56 2005
(556 letters)
>mm_chrX_104888554_104889509
Length = 956
Score = 986 bits (510), Expect = 0.0
Identities = 548/576 (95%), Gaps = 24/576 (4%)
Strand = Plus / Minus
Query: 5 gaattctttgtttatttctgagccccattttttagtggggttatttcatcactattttac 64
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 588 gaattctttgtttagctctgagccccatgttttagtggggttatttcatcactattttac 529
Query: 65 atagtaccagaatttgtagtcaggatcatggccaaaggaatttaaactatttaaattaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atagtaccagaatttgtagtcaggatcatggccaaaggaatttaaactatttaaattaaa 469
Query: 125 atgtaaaacattaaatttgtcatggtttattcttcttaatgcaatccctctcaaaattct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atgtaaaacattaaatttgtcatggtttattcttcttaatgcaatccctctcaaaattct 409
Query: 185 aatgttctttttaggacagagtatttttttcagtgtacatacactatgtcatctttaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aatgttctttttaggacagagtatttttttcagtgtacatacactatgtcatctttaaat 349
Query: 245 tttcatctcttgatggacaatttggtttcatatttgactgtacacttcctcagtgagaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttcatctcttgatggacaatttggtttcatatttgactgtacacttcctcagtgagaaa 289
Query: 305 gtgcagatgttgagcaacaatacttgaaaatagtc------------------------a 340
||||||||||||||||||||||||||||||||||| |
Sbjct: 288 gtgcagatgttgagcaacaatacttgaaaatagtcatatatatatatatatatatatata 229
Query: 341 tatatatatatatatatatattcctaaaggccacctccaaatctgtaggaactaatgaac 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 228 tatatatatatatatatatattcctaaaggccacctccaaatctgtaggaactaataaac 169
Query: 401 atatattgtacacttgaaggatacaaaaaccaacaaacggaaatagctttccatatgtca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atatattgtacacttgaaggatacaaaaaccaacaaacggaaatagctttccatatgtca 109
Query: 461 atgacaaactttttgcaaacttagtcatgaaaccatttccatttaatataactgcagagc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atgacaaactttttgcaaacttagtcatgaaaccatttccatttaatataactgcagagc 49
Query: 521 cagaaatgtgccttatatgtggagtgccagcactta 556
||||||||||||||||||||||||||||||||||||
Sbjct: 48 cagaaatgtgccttatatgtggagtgccagcactta 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_j12.g1 MSMg01no486_j12.g1 CHROMAT_FILE:
MSMg01no486_j12.g1 PHD_FILE: MSMg01no486_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:56 2005
(522 letters)
>mm_chrX_104820315_104821238
Length = 924
Score = 971 bits (502), Expect = 0.0
Identities = 518/524 (98%), Gaps = 2/524 (0%)
Strand = Plus / Plus
Query: 1 taagaactgtcttcgctacatagcaagccacattctcagcatgcaatgacagaatattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagaactgtcttcgctacatagcaagccacattctcagcatgcaatgacagaatattgg 260
Query: 61 ataaaggtgttaaaaagcaggtcttacagttgttcaagacatagataagtcttgaggata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaggtgttaaaaagcaggtcttacagttgttcaagacatagataagtcttgaggata 320
Query: 121 ttgttttaaatgaaataagacagaaagataaagaaatatattccttgaagttgaatgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttttaaatgaaataagacagaaagataaagaaatatattccttgaagttgaatgtga 380
Query: 181 aacccaaaattac--agttacatatatgaaagtatatgtctgtgtagaatgaacaaatat 238
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 aacccaaaattacatagttacatatatgaaagtatacgtctgtgtagaatgaacaaatat 440
Query: 239 aagtatattacataaaatgagctgtatagtaaaaaatattaattttttatatttttattt 298
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtatataacataaaatgagccgtatagtaaaaaatattaattttttatatttttattt 500
Query: 299 ttaaggataatatacattattaattaatcattttatttgtttaaaggaggaataacattt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 ttaaggataatatacattattaattaatcattttatttgtttaaaggaggaatgacattt 560
Query: 359 tagatttttcttttttcattttttttttctgaatcttctggcaggggtcagggtgttttg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagatttttcttttttcattttttttttctgaatcttctggcaggggtcagggtgttttg 620
Query: 419 tttagttttgttttgtttttcactccagattttatttcccaccatgcacccagggccacc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttagttttgttttgtttttcactccagattttatttcccaccatgcacccagggccacc 680
Query: 479 ctccaactgttccacatcctatacttcttccctaccccctgtat 522
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctccaactgttccacatcctatacttcttccctaccccctgtat 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 924
Length adjustment: 10
Effective length of query: 512
Effective length of database: 914
Effective search space: 467968
Effective search space used: 467968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
