NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCG
GAATTCTTGGTTTATTCCTATACCACATTTTTTGATTGGTTTGTTTGTTT
TTTTGGTGATTAACTTCTTGAGTTCTTTATGTAGTTTGTATATTACTCCT
CTATCGTATGTAGGGTTCATGAAAATGTTTTCGAAATCTGTAAGTTGCCG
ATTTGTCTTATCAATTATGCACTTTGCCTTACATAATCTGTCCAGTTTCA
TGAGGTCACACTTATCACTTCTTGATCTTAGACCATGATCCATTGGAGTT
CTGTTTAGGAAATTTCCTCCAGTGTTTTTGAGAGGGATGGGGTTGCCATC
CCACAGTCACATCTCTGACCCATAATTGTTCCTGTCTGAATGAATTACAG
GGATGTAAATTGAGAAGAGCCTGAGGAAAAGAAGGTCCAGCTACAGGGCC
AAAGTGGGATCTAGCTCAAAGGGAGGTTCCAAGGCCTGACACTATTAATG
AGGGTATGGAGCGCTCACAAAAAGGGATCTATCATAACTGCCTTCCAAAA
GATCCAACAAGCAGCTGAAAGTGTCAGATGCAGATATTTGCACCCAGACA
ATGGACAGAAGACTCTGACCACTGTTGTTGAATTAGGGAAGGCTGATAGA
AGCTGAAGAGAAGGGTGATCCTGTAGGAGGACCAGGAGTCTCAATTAACC
TGGACCCCAGAGATATCTCAAACACTAGACAACCAAACAAGCAGCATACA
CCAGCAGATACGAGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGAATCCCTTATCTACCACATTTAT
AGGCTTTTTCTTTCTTTCTTTTTTTAAAATCACCTTATTTCAAAGCACAG
GGCTCTTTTTTTTCTTAAACCTTTATAATCTCATAGAGATTACTTTCCTC
ATCAGACTAATTATATAACACTACTTTCTAGGGAAATTTTGCAATAAAAT
TTCCATAAAAAGATCATTATATTCTTCAGCTCAATCATTAGATAATTTAC
TGCATGGCTTAATTTGACTTTGTTCATTTTTGATAGGCTTTGTAAAATAG
TGGCAACACAGATACTAAGAAACGTATTGTGGTTTGGATTCATAAGATTT
GCTTACTCTTAATGAATGCCTGAAACAAATAAATGAAAGATCCATTAGTA
AAAATGTAGTAGTCTTCCAAATATATTCTGTCGCATGTTATTTATCACCA
ATAACTAATATTTCACAAATTTCCACTATTTTAATCACTTTTATGTAAAT
TCAATGATATTTTATTGAATTGTAGGTCTACTTTGCACCTGAACTTATTC
TAAGCATAAGAGAATGGTAAAAATAAGACTGGAACAAGAGAAAGAAAAAG
AAAAATCAGAAAGAGCTCACAATCTGGTTTAGTTGAGAAAAGTAATAGAA
GCAATTTTGGTCAACAGTGTGAAGTACTGGTATATAGGAATAAGGAACGT
TTTGCC

Query= MSMg01no487_j18.g1 MSMg01no487_j18.g1 CHROMAT_FILE:
MSMg01no487_j18.g1 PHD_FILE: MSMg01no487_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:16 2005
         (605 letters)



>mm_chrX_128985953_128986956
          Length = 1004

 Score = 1147 bits (593), Expect = 0.0
 Identities = 602/605 (99%), Gaps = 1/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgaatcccttatctaccacatttataggctttttctttctttctttttttaaaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgaatcccttatctaccacatttataggctttttctttctttctttttttaaaatca 260

                                                                       
Query: 61  ccttatttcaaagcacagggctcttttttttcttaaacctttataatctcatagagatta 120
           | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctttatttcaaagcacagggctcttttttt-cttaaacctttataatctcatagagatta 319

                                                                       
Query: 121 ctttcctcatcagactaattatataacactactttctagggaaattttgcaataaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttcctcatcagactaattatataacactactttctagggaaattttgcaataaaattt 379

                                                                       
Query: 181 ccataaaaagatcattatattcttcagctcaatcattagataatttactgcatggcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccataaaaagatcattatattcttcagctcaatcattagataatttactgcatggcttaa 439

                                                                       
Query: 241 tttgactttgttcatttttgataggctttgtaaaatagtggcaacacagatactaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgactttgttcatttttgataggctttgtaaaatagtggcaacacagatactaagaaa 499

                                                                       
Query: 301 cgtattgtggtttggattcataagatttgcttactcttaatgaatgcctgaaacaaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cgtattgtggtttggattcataagatttgcttactcttaatgaatgcctgaaacaaataa 559

                                                                       
Query: 361 atgaaagatccattagtaaaaatgtagtagtcttccaaatatattctgtcgcatgttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgaaagatccattagtaaaaatgtagtagtcttccaaatatattctgtcgcatgttatt 619

                                                                       
Query: 421 tatcaccaataactaatatttcacaaatttccactattttaatcacttttatgtaaattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatcaccaataactaatatttcacaaatttccactattttaatcacttttatgtaaattc 679

                                                                       
Query: 481 aatgatattttattgaattgtaggtctactttgcacctgaacttattctaagcataagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatgatattttattgaattgtaggtctactttgcacctgaacttattctaagcataagag 739

                                                                       
Query: 541 aatggtaaaaataagactggaacaagagaaagaaaaagaaaaatcagaaagagctcacaa 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatgttaaaaataagactggaacaagagaaagaaaaagaaaaatcagaaagagctcacaa 799

                
Query: 601 tctgg 605
           |||||
Sbjct: 800 tctgg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1004
Length adjustment: 10
Effective length of query: 595
Effective length of database: 994
Effective search space:   591430
Effective search space used:   591430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)