CCCCNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTGTATGTGTTCCACAGCATGGATGTAGATACAAATTTTA
TATCTGAAAACAGACAGTAATGGGAATGTGAGGGATAAGAAAGAGAAAGG
TAGTGGGTATTATAGTGAATATGTTTAATGTAAAATAAATCCATTTTAGA
AATTGTGCTCATGTAACAAAATAACATGCATGTACATATGTGTATGTACA
TATGTATGTATATATGATAAGACATTTTATATTGGTTAAATCTATTCCCC
ATTGCATTCATCTAATTCCTCCCTAATTGTCTGCACCAATGTTCCCCTCC
AAGTTTTAAATTTGTATTTAATTTTTTTTTTCGAGACAGGGTTTCTCTGT
ATTGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAA
CTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTG
TGCCACTGCCGCCCAGCATACTTAATTTTTAAAGCTTATTCACTTCACAT
CCCACTCACTGCCCCCTCCTGGTCACCACCTCCCACAATCCTTCCCTCCA
TCTTCCTCTCCCATTCTTCTCTGAGTGGGTGGGAACCCCCTGTGTATTCC
CCCTATATTGGCACATCAAGTCTCTGTGAGGCTAGGCACTTTCTCTCCCA
CTGAGGCCAGACAAGGCAGCACAGCTAG

NGGCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAACAGTACTAATGATAGCT
GTTAAGTTTTCAGATAAGAGCATGTTGTCCTCTGAGAGGCTCCAACCAGC
AGCTGAACCAGACAAATACAGATACTCATAGCCAAACAGTGGATGAGCCT
AGGGTACTTTTATGGAAAAATAATAAGAATGATTGTGGGCCCCAAAGGTG
TTAGGAACTCCACAGGAAGACCAAACAGATTCAACTAACCCGGACCCTTG
GGGCTCTCAGAGTCTGAACCATCAACCAAAGAACATGCACAGACTAGACC
CAGGTCTCCCCTGATACATGTAGCAGATATGCAGCTTGGTCTTCATTTGG
GTTCTGAACTACTGGAGCAGGGGCTATCCCAAAAACTGTTGCTATACATT
AGATATGTTCTTCTAGCTGTGCTGCCTTGTCTGGCCTCAGTGGGAGAGAA
AGTGCCTAGCCTCACAGAGACTTGATGTGCCAATATAGGGGGAATACACA
GGGGGTTCCCACCCACTCAGAGAAGAATGGGAGAGGAAGATGGAGGGAAG
GATTGTGGGGAAGGTGGTGACCAGGAGGGGGCAGTGAGTGGGGATGTGAA
AGTGATAAGCTTTAAAAATTAAGTATGCTGGGCGGCAGTGGCACACACCT
TTAATCCCAGCACTTGGGGAGGCAGAGGCTAGGCAAATTTCTTGAATTTT

Query= MSMg01no487_m01.b1 MSMg01no487_m01.b1 CHROMAT_FILE:
MSMg01no487_m01.b1 PHD_FILE: MSMg01no487_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:27 2005
         (675 letters)



>mm_chrX_94298363_94299437
          Length = 1075

 Score = 1237 bits (640), Expect = 0.0
 Identities = 665/678 (98%), Gaps = 10/678 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattgtatgtgt---tccacagcatggatgtagatacaaattttatatctgaaaacagac 62
           ||||||||||||   |  |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 727 aattgtatgtgtacat--acagcatgaatgtagatacaaattttatatctgaaaacagac 670

                                                                       
Query: 63  agtaatgggaatgtgagggataagaaagagaaaggtagtgggtattatagtgaatatgtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agtaatgggaatgtgagggataagaaagagaaaggtagtgggtattatagtgaatatgtt 610

                                                                       
Query: 123 taatgtaaaataaatccattttagaaattgtgctcatgtaacaaaataacatgcatgtac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 taatgtaaaataaatccattttagaaattgtgctcatgtaacaaaataacatgcatgtac 550

                                                                       
Query: 183 atatgtgtatgtacatatgtatgtatatatgataagacattttatattggttaaatctat 242
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 549 atatgtgtatgtacatatgtatgtatatatgataagacattttattttggttaaatctat 490

                                                                       
Query: 243 tccccattgcattcatctaattcctccctaattgtctgcaccaatgttcccctccaagtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tccccattgcattcatctaattcctccctaattgtctgcaccaatgttcccctccaagtt 430

                                                                       
Query: 303 ttaaatttgtatttaa-----ttttttttttcgagacagggtttctctgtattgccctgg 357
           ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttaaatttgtatttaatttttttttttttttcgagacagggtttctctgtattgccctgg 370

                                                                       
Query: 358 ctgtcctggaactcactttgtagaccaggctggccttgaactcagaaatctgcctgcctc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctgtcctggaactcactttgtagaccaggctggccttgaactcagaaatctgcctgcctc 310

                                                                       
Query: 418 tgcctcccaagtgctgggattaaaggtgtgtgccactgccgcccagcatacttaattttt 477
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgcctcccaagtgctgggatttaaggtgtgtgccactgccgcccagcatacttaattttt 250

                                                                       
Query: 478 aaagcttattcacttcacatcccactcactgccccctcctggtcaccacctcccacaatc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaagcttattcacttcacatcccactcactgccccctcctggtcaccacctcccacaatc 190

                                                                       
Query: 538 cttccctccatcttcctctcccattcttctctgagtgggtgggaaccccctgtgtattcc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cttccctccatcttcctctcccattcttctctgagtgggtgggaaccccctgtgtattcc 130

                                                                       
Query: 598 ccctatattggcacatcaagtctctgtgaggctaggcactttctctcccactgaggccag 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ccctatattggcacatcaagtctctgtgaggctaggcactttctctcccactgaggccag 70

                             
Query: 658 acaaggcagcacagctag 675
           ||||||||||||||||||
Sbjct: 69  acaaggcagcacagctag 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)