BAC Information

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BAC

Clone NameMSMg01-489N21
ChromosomeX (Build37)
Map Location 158,504,015 - 158,504,420
singlet/doubletsinglet
Overlap geneNhs
Upstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489N21.T7 (MSMg01no489_n21.b1)MSMg01-489N21.TJ (MSMg01no489_n21.g1)
ACCAG568244AG568245
length761742
length of high quality
(start - end)		449 (60 - 508)605 (83 - 687)
definitionCHROMAT_FILE: MSMg01no489_n21.b1 PHD_FILE: MSMg01no489_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:16 2005CHROMAT_FILE: MSMg01no489_n21.g1 PHD_FILE: MSMg01no489_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCCGCNGGAATCTTTCTGTCACCCCTTATAGAAATGAGTGCAGCGTTCT
TGAGCTGTGGCCGATTTATACAGCAGGCATTGTCCCTCGTTTGTATGAGC
TTGCCAGATCATGGAGAGCCAGGATGCCTCCTCCCATAAGAAGAACAATT
TTTCCTCAACTAGATAACCAGTTTATTGTCAACCTATAATATATAGTTGT
CAAAACCTCTAAGCTTGTGCTGTCCAATATAGCCATCTCTAGCTTCAATA
CTGTAAGTATAGAAACACAGTGGCTATGATTGAGCATCTGGATTTAAATT
TTTACTTTATCTTAATTAATTTAAAATTTAAAAGTGGTATTTGATTAGTA
GAAACATATTAGTATCTTTGAAATAATGTCCATATGTGAATCTAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATTCANNTGTTTA
TTTCCTAANTCCTGANTACANATCAAGTACTCTTGATGGAAATTTTCTAC
TCACACTTGAGAGGCACTGTAACAAACACATGTGATTTCAAAGACCAAGT
GAAAAAAGAGAATATGAAATGTTTCCTTATGAAATGGGTGCAGGGATCAC
ATATATTAAAAGTATATTTTAGATAAATTAAATATAACATTTTCATTTTA
CTCCTTTCCCCTTTTCTTTTTAAAACATGGTTACTGGCAAAATTCAGATC
CCTGTGTGGGG

NAAATTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATAT
AATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_n21.b1 MSMg01no489_n21.b1 CHROMAT_FILE:
MSMg01no489_n21.b1 PHD_FILE: MSMg01no489_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:16 2005
         (449 letters)



>mm_chrX_158504015_158504863
          Length = 849

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Minus

                                                                       
Query: 13  accccttatagaaatgagtgcagcgttcttgagctgtggccgatttatacagcaggcatt 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 accccttatagaaatgagtgcagcgttcttgagctgtggccgatttatacagcaggcatt 347

                                                                       
Query: 73  gtccctcgtttgtatgagcttgccagatcatggagagccaggatgcctcctcccataaga 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtccctcgtttgtatgagcttgccagatcatggagagccaggatgcctcctcccataaga 287

                                                                       
Query: 133 agaacaatttttcctcaactagataaccagtttattgtcaacctataatatatagttgtc 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agaacaatttttcctcaactagataaccagtttattgtcaacctataatatatagttgtc 227

                                                                       
Query: 193 aaaacctctaagcttgtgctgtccaatatagccatctctagcttcaatactgtaagtata 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aaaacctctaagcttgtgctgtccaatatagccatctctagcttcaatactgtaagtata 167

                                                                       
Query: 253 gaaacacagtggctatgattgagcatctggatttaaatttttactttatcttaattaatt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaaacacagtggctatgattgagcatctggatttaaatttttactttatcttaattaatt 107

                                                                       
Query: 313 taaaatttaaaagtggtatttgattagtagaaacatattagtatctttgaaataatgtcc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 taaaatttaaaagtggtatttgattagtagaaacatattagtatctttgaaataatgtcc 47

                                                         
Query: 373 atatgtgaatctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 418
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  atatgtgaatctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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