BAC Information

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BAC

Clone NameMSMg01-491L06
ChromosomeX (Build37)
Map Location 124,319,510 - 124,320,012
singlet/doubletsinglet
Overlap genenone
Upstream gene4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
Downstream geneLOC385523, LOC100040516, Mdm4-ps, EG237030, LOC100040538
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L06.T7 (MSMg01no491_l06.b1)MSMg01-491L06.TJ (MSMg01no491_l06.g1)
ACCAG569635AG569636
length776754
length of high quality
(start - end)
317 (62 - 378)504 (61 - 564)
definitionCHROMAT_FILE: MSMg01no491_l06.b1 PHD_FILE: MSMg01no491_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:41 2005CHROMAT_FILE: MSMg01no491_l06.g1 PHD_FILE: MSMg01no491_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGAATTCTCTGAATGG
ATTTCTCTTCAGTCTCTGCTCCACTCTTTTTCCATGTATTTCCTTTCGAC
AAGAGTAATTCTGGGTTAATATTTTTGAGATGGGTGGGTGGACCCACCCC
TCAGTAGGAAACTGTGCCAAACCTCTGGATATGGTCTCTACAGGCTCTCA
CTCACCTTTGTTGGATATTTCAGCTAATGTCACCCTTCTTGGGTCCTGGG
AGACTCTTGTTTCCTTGATATCTTGGACTTTCTAGTGACTACCACGAGTT
CCTGATCCCCCATTTTTACACACCTTCATTCAGTGTCCTGACTCTCTATG
TCTCCTCTTTTTCTCCCACACATGGTCCTGCACACATCCCCATATTCCTT
CTCCCTCATCTCTCCTTCTTTAATTCTTCTCTCCTTGTTCCTCCTGATTA
ATTATTTGTCTCTCCCCACCCCTCGTCATCTTTAGTATTCCTGAAGTATT
CCTTATTCATGATCTTCCTTCTTCCTTGATCTATATATTGTTTATATATT
TCCATCCTAATTTATTTCTTAACCTTACTTTTCCAACATTTCACTTCATT
ACTGATACCAATTAACTCCTATGCTTCTCTTCTGCTCTCCTAACTATTAT
TACAACCTTTAAACCTATTTTATCCCCTCATTCATGTATCACTTATTGTA
CCTCTCTCCACTCCTAATAACCGCGATAAATACTACTCTTCTCTACTTTC
CTCTACAACCTTGCATCTCCTCCCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTTTATTCATACTTGTTAAATTACCTTTCTAATCTATTATA
TAGTGTGTGTGTTGTGATAAAAACTGACAAGGCTTTAGGCGTACCCAGTA
AAAACCAGGCTAAAACATAGGATATTTTTGGCACTTATATTTTAATAGTC
ATCATCAATAAAATATCTTTTTTGTGAATTTGCTCCAGTCCTAATAATTC
TGACATAATGTTCTCAAGAACTTTTAGTCAAAGATATAACAGTTTTACAC
AAGCCTAACTCATTCTTTATCTGTCTTAGTGAAACGGACAATGCAATTAT
GAGTTCGGATATAATTAAAACCCAACTGATTTTCTAATACAACTAATAAA
AAATATACTCATACGTAAATAAAGGGAAAATTGTGTAAAATTGAAGAAGG
ATTAAACAAGAGTTATATACATACTAATTCAGAAGCTATCTATTATTTTG
AACTTAAATATTCACTAATTATGTCAGTCTCAAGAATTAGGGGAATGTTC
TAAGCAAAGATTCACTTATTCTAAAATGAGCTTTAATGTAGTCACATTAT
TTTATTTATGATCACCCAAATGACAGAATCAGAAAAAAATATACCAAAGC
AAACTAACACAAACATGAATATTAGATGATTGTGTGTAAGGTCTTGTTTT
AGTCTTCATACTTACAATTATCCATAGTCAACAAAGGATATTCAATCCTT
ACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l06.g1 MSMg01no491_l06.g1 CHROMAT_FILE:
MSMg01no491_l06.g1 PHD_FILE: MSMg01no491_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:41 2005
         (504 letters)



>mm_chrX_124319310_124320212
          Length = 903

 Score =  944 bits (488), Expect = 0.0
 Identities = 500/506 (98%), Gaps = 5/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattcatacttgttaaattacctttctaatctattatatagtgtgtgtgttgtgataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttattcatacttgttaaattacctttctaatctattatatagtgtgtgtgttgtgataa 260

                                                                       
Query: 61  aaactgacaaggctttaggcgtacccagtaaaaaccaggctaaaacataggatatttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactgacaaggctttaggcgtacccagtaaaaaccaggctaaaacataggatatttttg 320

                                                                       
Query: 121 gcacttatattttaatagtcatcatcaataaaatatcttttttgtgaatttgctccagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacttatattttaatagtcatcatcaataaaatatcttttttgtgaatttgctccagtc 380

                                                                       
Query: 181 ctaataattctgacataatgttctcaagaacttttagtcaaagatataacagttttacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaataattctgacataatgttctcaagaacttttagtcaaagatataacagttttacac 440

                                                                       
Query: 241 aagcctaactcattcttta--tctgtcttagtgaaacggacaatgcaattatgagttcgg 298
           |||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcctaactcattc---aaatctgtcttagtgaaacggacaatgcaattatgagttcgg 497

                                                                       
Query: 299 atataattaaaacccaactgattttctaatacaactaataaaaaatatactcatacgtaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 atataattaaaacccaactgattttctaatacaactaataaaaaatatactcatatgtaa 557

                                                                       
Query: 359 ataaagggaaaattgtgtaaaattgaagaaggattaaacaagagttatatacatactaat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ataaagggaaaattgtgtaaaattgaagaaggattaaacaagagttatatacatactaat 617

                                                                       
Query: 419 tcagaagctatctattattttgaacttaaatattcactaattatgtcagtctcaagaatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcagaagctatctattattttgaacttaaatattcactaattatgtcagtctcaagaatt 677

                                     
Query: 479 aggggaatgttctaagcaaagattca 504
           ||||||||||||||||||||||||||
Sbjct: 678 aggggaatgttctaagcaaagattca 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)