BAC Information

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BAC

Clone NameMSMg01-493H21
ChromosomeX (Build37)
Map Location 43,350,970 - 43,517,347
singlet/doubletdoublet
Overlap genenone
Upstream gene1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493H21.T7 (MSMg01no493_h21.b1)MSMg01-493H21.TJ (MSMg01no493_h21.g1)
ACCAG570998AG570999
length756768
length of high quality
(start - end)		572 (45 - 616)475 (75 - 549)
definitionCHROMAT_FILE: MSMg01no493_h21.b1 PHD_FILE: MSMg01no493_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:03 2005CHROMAT_FILE: MSMg01no493_h21.g1 PHD_FILE: MSMg01no493_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,516,875 - 43,517,347)(43,350,970 - 43,351,444)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACAATTTTCTCAGTACAAGATTCCTTTGGGATACTTGTAAGATG
AGTATTATAGTTGTTTTATTCCTTTTGTGAAATAAAGATATCAAAAAAGG
AAGGAAAAAGAACTGTGTATCTTCATGCATTTTAGGAACAAAAATAAAAT
TATTTCTCTTCCTTTAACCTTTTATATTATTTTTATATTACCCTATTAAA
CCTTTCCTTTTTACTACCTCTGGTAGGCTAGAAGGGAGGTTAAAGCGTTT
AAATACACTTATTAAAGTAGGTTTTGAAAAATAGAAGCCAACAGCAGTTG
AATATATTTTCCTGAAACTTTATAACCACTTAAGTAAGATCCCTGTAACA
ATTCATTTAACTGTTTTCTTGAAGTCCCAAAATGTAGTTGTACATCTATT
AATTAGATCTTTGGATTTTTAAGACACTAAAAAAGAATTCTAGATACATG
CCCAGTTCTCCTTGAACTCAAGGAACAGCTAAGGGAATCCAAATAGTCTG
TCTCTAGGATGTCCTGGGAAATGAACTATGCAATTCTTACAATCTTCCAG
GTGCTCCTCTATACCCATAGAAGAGGTCTAGTCCTTGTGTGACATTCAAA
GAGGAAAACACAAAATCCCATTACAAATCACATTATATAACATTCCTACA
GTGGCTTATCTAGCATAGAATTTGTCCACATATTTTGTGGATAATTACAG
ACATCN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTTTCATGTTGAACCATTATTTGC
AATATCAGAATCTCTTTAGTGTTTATTTTTGTATTTATAAGCAGTTCATC
AAAATGCATTATTTTCTTTGTTTTCTTCTAATTTAAAATGAGTTGTTTTA
TCTTATCTAGACATGGGGGACTTTTGGGATAACATTGGAAATGTAAATGA
AGAAAATACCTAATTAAAAAAATATCCTTGCAGCAAGTTTCTAATCAATT
TAGCAAGTGACTTCTTGTATTTGTTATGCTTTCTGTGTATTTGTATCACT
GAATATTGTTTTTCATGAAAATCATTTTCAATGAACAATAGGGAATCAAT
TTTGGAAAACATAGTTTATCCTGAGTCATAACACATCCCCTGCATTAATT
TCTTACAGTGTTCTTTATATGTGTCTCTGCTATGAAATTAAGTATCTCAA
ACTAAGATTCTTAAATGGAATAAGAAGTTAATGCAGATAGACACATTAGG
AAGAATGTTTCAAAAATTGTAATGCTTTCTTGTTGNCAGGACAGNACTTG
ATTTTCATGTGTAGTTCACTGTTAATTACCAGCTCACGGCTGATTGCAGA
TGCCCAGAAACTGCATCCCCTCTATTTGATTGGTGAAAAATCTTTACCCA
GATCAGGCTCAATGGTCTCATTGGNCATTGTCTTCTGAAATATGCAATCA
ATATTCCTGGGATTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_h21.b1 MSMg01no493_h21.b1 CHROMAT_FILE:
MSMg01no493_h21.b1 PHD_FILE: MSMg01no493_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:03 2005
         (572 letters)



>mm_chrX_43516376_43517347
          Length = 972

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 100 aaaaaggaaggaaaaagaactgtgtatcttcatgcattttaggaacaaaaataaaattat 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 aaaaaggaaggaaaaagaactgtgtatcttcatgcattttaggaacaaaaataaaattat 913

                                                                       
Query: 160 ttctcttcctttaaccttttatattatttttatattaccctattaaacctttccttttta 219
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ttctcttcctttagccttttatattatttttatattaccctattaaacctttccttttta 853

                                                                       
Query: 220 ctacctctggtaggctagaagggaggttaaagcgtttaaatacacttattaaagtaggtt 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ctacctctggtaggctagaagggaggttaaagcgtttaaatacacttattaaagtaggtt 793

                                                                       
Query: 280 ttgaaaaatagaagccaacagcagttgaatatattttcctgaaactttataaccacttaa 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttgaaaaatagaagccaacagcagttgaatatattttcctgaaactttataaccacttaa 733

                                                                       
Query: 340 gtaagatccctgtaacaattcatttaactgttttcttgaagtcccaaaatgtagttgtac 399
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 732 gtaagatccctgtaacaattcattcaactgttttcttgaagtcccaaaatgtagttgtac 673

                                                                       
Query: 400 atctattaattagatctttggatttttaagacactaaaaaagaattctagatacatgccc 459
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 672 atctattaattagatctttggatttttaagatactaaaaaagaattctagatacatgccc 613

                                                                       
Query: 460 agttctccttgaactcaaggaacagctaagggaatccaaatagtctgtctctaggatgtc 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agttctccttgaactcaaggaacagctaagggaatccaaatagtctgtctctaggatgtc 553

                                                                
Query: 520 ctgggaaatgaactatgcaattcttacaatcttccaggtgctcctctataccc 572
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgggaaatgaactatgcaattcttacaatcttccaggtgctcctctataccc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_h21.g1 MSMg01no493_h21.g1 CHROMAT_FILE:
MSMg01no493_h21.g1 PHD_FILE: MSMg01no493_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:03 2005
         (475 letters)



>mm_chrX_43350770_43351644
          Length = 875

 Score =  919 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactttcatgttgaaccattatttgcaatatcagaatctctttagtgtttatttttgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactttcatgttgaaccattatttgcaatatcagaatctctttagtgtttatttttgtat 260

                                                                       
Query: 61  ttataagcagttcatcaaaatgcattattttctttgttttcttctaatttaaaatgagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttataagcagttcatcaaaatgcattattttctttgttttcttctaatttaaaatgagtt 320

                                                                       
Query: 121 gttttatcttatctagacatgggggacttttgggataacattggaaatgtaaatgaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttatcttatctagacatgggggacttttgggataacattggaaatgtaaatgaagaa 380

                                                                       
Query: 181 aatacctaattaaaaaaatatccttgcagcaagtttctaatcaatttagcaagtgacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacctaattaaaaaaatatccttgcagcaagtttctaatcaatttagcaagtgacttc 440

                                                                       
Query: 241 ttgtatttgttatgctttctgtgtatttgtatcactgaatattgtttttcatgaaaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtatttgttatgctttctgtgtatttgtatcactgaatattgtttttcatgaaaatca 500

                                                                       
Query: 301 ttttcaatgaacaatagggaatcaattttggaaaacatagtttatcctgagtcataacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttcaatgaacaatagggaatcaattttggaaaacatagtttatcctgagtcataacac 560

                                                                       
Query: 361 atcccctgcattaatttcttacagtgttctttatatgtgtctctgctatgaaattaagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcccctgcattaatttcttacagtgttctttatatgtgtctctgctatgaaattaagta 620

                                                                  
Query: 421 tctcaaactaagattcttaaatggaataagaagttaatgcagatagacacattag 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctcaaactaagattcttaaatggaataagaagttaatgcagatagacacattag 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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