BAC Information

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BAC

Clone NameMSMg01-493J12
ChromosomeX (Build37)
Map Location 95,818,261 - 95,818,880
singlet/doubletsinglet
Overlap geneOphn1
Upstream geneLOC668244, Ar, LOC100042324
Downstream geneYipf6, LOC100042932, Stard8, LOC436219, Efnb1, Pja1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493J12.T7 (MSMg01no493_j12.b1)MSMg01-493J12.TJ (MSMg01no493_j12.g1)
ACCAG571074AG571075
length1,559750
length of high quality
(start - end)		---619 (74 - 692)
definitionCHROMAT_FILE: MSMg01no493_j12.b1 PHD_FILE: MSMg01no493_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:11 2005CHROMAT_FILE: MSMg01no493_j12.g1 PHD_FILE: MSMg01no493_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAATAGTACAATGCGTTGCCCNCAAATATCANGCGAGCACCAGNCTCG
CCTCCTACACAGAAAGAANAAGAACGCCGCGCCGCGCGTCTTCGGGGCAT
CTACTCCCGCGGGCGCGCCACATTACAGCTACGCTGTATGACTGAGTCGT
GCGCTGTGCTATGTGTTGCTCATACCATGCTTGTATAAGCAGAATAATGA
TNAGATGTCGTGATGAACACTCAATGCTCGCTCACACTAAGTACCAACTA
GCGACACAATGAAAGGCATTCAAGAATATGATACTTACATAATATAGTAG
TATTATAGTCAAGTGTGATAGTGGCGTGTGTCAGTGAGAGCTGTATGTTG
TGCATGCACTCGCCTGATTATGCAGCATCTAGTGTGTGTCAATAATACGA
CAAATGTTGTGTACGCGCATCCTACACTCAACTCTGTTGCACAACACCGC
GAGAGTGGGTGGCCCCGCGCGTTCTTCTCTCCTACGCTCTGCTGTCCCGC
CTCTTATATATCTTATAATTCTATATTATTATACATCGAGGTGTGGANAN
TCACACGATGGTAGATTTACTCCTATCACCATCCTTTCACGTCCTATACA
CATACTAAGAAAACCATATATCACATAGTCTACACCANCACTAGCTCTAC
TGCGACGCTAGTAACTACTCACTCATCGATCGCCCACTCACACACCACCA
CCTAACCTATACCACACATCCATTCTGTTCAACTTCATCAGAAACAATAC
TTCAGCAACACACGTATCTCCTCTCGTCTGCTGTATCGCGCTCGNCCGCT
CACTACCTATCTCTGTGGTGTGCGTCGGNTNGCTACGAAGCGATACGCCA
GACNCGTCGTACAACTGTCACATGTAATACACTCATCTCATGCATCTACG
CTCTGATGAGTATGTATGCTGTCTACCTGCGCCGCGTACCGTCGCACCTG
TGAGTGCGACCTCGTGCTTATCTATAACGTGTAGACGTGCATGCACAACT
CTCTACTCGTATGGTGTANACGGTATANGTCNACGACTAGATTAGCTGCT
ATGAAGTAAGCGCGTCGCATCGCAGTGTNCAGAGTAGATATATCATATAT
CGATGCACTCACATCATCTTGCGAGTACNACCCTGCTCGTCAGCGCGGAG
TGTGCTATACTGGACGCGCACGAGATAGTTGATGTGTGCGCACGCGCTGA
GTGATACTAGTCTGTAGCGCTCAGGTGTGATCACACGTTGGTGAGAACGC
TCGCGTCGTACGGATGCACTGCTATCGCGCGCGCACCTGTAGAGTGTAGT
CAGTAGAGATGCCGCACATGAGTAGACANCATCTCCTTGNTGTCTNTGTC
ACCGCACTANACTATCACTGTCGTGGTCTGGTGCGCTCGTGTACTCGCTG
GTGCTGAAGCAACGACTGATGTTCGTCGTATACATAACTTATTATCTACT
AATACCAGCACATATATGTACCACAGCACAGCATNACGTGTGTGTACGTG
ACCTACCTATGATTCTTACGTCTGACGTCTCTCTATGTATTGATACTCTC
TCGTCTGAN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAAAATATAGGTATACTAAGAAGC
ACACTGTGTTCAATGAGTAGAATAAGCAACATAGTAATGATATCATTTCT
TTCCAAAATGATCTGTATGTTTAAGACAATGACAAGTTCAACAGAATATT
TCTGTAGGTAATGACAGGCTTATACTAGGTATAGGAATATAAAAGGAACT
ATAAAAGCTAATACAATTTTGAAAAAGAACAAATTGAGATTCATTGTTAA
TATTAATGGTTATGATATTTAAAACCTAAGACAATATACACTGAGCAGAT
GGACAGACACAGACCAGTTGAACCAAATAAAGAATGTGTAAACAGTCCTA
CAAAGTTTGGATAAATTGTTTTTCACAAAGATAGAAAAGTGGCTGGCGAT
GTAGGTCAGTGGTAGAGCACTTGTCTTCCATATCTCAGGCCCCAAGTTTT
AAATATCTAAGTACTGCAAAAAGATTATTAAAGAGAGAGAATATTCTTTT
TAATACATTCTGTGGGAAATTGCATATACATTGCTAATAAAAGTGAACTT
CATTTTTCAAAGCATGTGCAAAGTCAACTCAAAATAGATTGAGTAAAAAG
AAGCAAAATTAACAGCAAAATATGGAGTATTCAGTTGCAGATGAAGTTTT
GGAAGAGTTTTCAGTGTGCTGCCCAAATACACCTCAGAAAGAAAATTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_j12.g1 MSMg01no493_j12.g1 CHROMAT_FILE:
MSMg01no493_j12.g1 PHD_FILE: MSMg01no493_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:11 2005
         (619 letters)



>mm_chrX_95818105_95819123
          Length = 1019

 Score = 1152 bits (596), Expect = 0.0
 Identities = 614/622 (98%), Gaps = 5/622 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaaatataggtatactaagaagcacactgtgttcaatgagtagaataagcaacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 acagaaaatataggtatactaagaagcacactgtgttcaatgagtagaataagcaacata 717

                                                                       
Query: 61  gtaatgatatcatttctttccaaaatgatctgtatgtttaagacaatgacaagttcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gtaatgatatcatttctttccaaaatgatctgtatgtttaagacaatgacaagttcaaca 657

                                                                       
Query: 121 gaatatttctgtaggtaatgacaggcttatactaggtataggaatataaaaggaactata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaatatttctgtaggtaatgacaggcttatactaggtataggaatataaaaggaactata 597

                                                                       
Query: 181 aaagctaatacaattttgaaaaagaacaaattgagattcattgttaatattaatggttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaagctaatacaattttgaaaaagaacaaattgagattcattgttaatattaatggttat 537

                                                                       
Query: 241 gatatttaaaacctaagacaatatacactgagcagatggacagacacagaccagttgaac 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gatattcaaaacctaagacaatatacactgagcagatggacagacacagaccagttgaac 477

                                                                       
Query: 301 caaataaagaatgtgtaaacagtcctacaaagtttggataaattgtttttcacaaagata 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 476 caaataaagaatgtgtaaacagtcctacaaagtttggataaattatttttcacaaagata 417

                                                                       
Query: 361 gaaaagtggctggcgatgtaggtcagtggtagagcacttgtcttccatatctcaggcccc 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaaaagtggctggggatgtaggtcagtggtagagcacttgtcttccatatctcaggcccc 357

                                                                       
Query: 421 aagttttaaatatct---aagtactgcaaaaagattattaaagagagagaatattctttt 477
           |||||||||  ||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aagttttaa--atctcccaagtactgcaaaaagattattaaagagagagaatattctttt 299

                                                                       
Query: 478 taatacattctgtgggaaattgcatatacattgctaataaaagtgaacttcatttttcaa 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 taatacattctgtgggaaattgcatatacattgctaataaaagtgaacttcatttttcaa 239

                                                                       
Query: 538 agcatgtgcaaagtcaactcaaaatagattgagtaaaaagaagcaaaattaacagcaaaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agcatgtgcaaagtcaactcaaaatagattgagtaaaaagaagcaaaattaacagcaaaa 179

                                 
Query: 598 tatggagtattcagttgcagat 619
           ||||||||||||||||||||||
Sbjct: 178 tatggagtattcagttgcagat 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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